RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 CAGE1Q8TC20 777 aa17.21■□□□□ 0.35
NUP54-214ENST00000514307 SHC3Q92529 594 aa17.21■□□□□ 0.35
NUP54-214ENST00000514307 TSGA10Q9BZW7 698 aa17.21■□□□□ 0.35
NUP54-214ENST00000514307 RRAGDQ9NQL2 400 aaPredicted RBP17.21■□□□□ 0.35
NUP54-214ENST00000514307 PRDM10Q9NQV6 1147 aa17.21■□□□□ 0.35
NUP54-214ENST00000514307 TRMT13Q9NUP7 481 aaKnown RBP17.21■□□□□ 0.35
NUP54-214ENST00000514307 SNTG2Q9NY99 539 aa17.21■□□□□ 0.35
NUP54-214ENST00000514307 PARP2Q9UGN5 583 aa17.21■□□□□ 0.35
NUP54-214ENST00000514307 ITGA11Q9UKX5 1188 aa17.21■□□□□ 0.35
NUP54-214ENST00000514307 ZSWIM8A7E2V4 1837 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 KRT86O43790 486 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 EVI5O60447 810 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 ASS1P00966 412 aaKnown RBP17.2■□□□□ 0.34
NUP54-214ENST00000514307 CD4P01730 458 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 CTSHP09668 335 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 RAB27AP51159 221 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 WNT7BP56706 349 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 PTK2Q05397 1052 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 BMS1Q14692 1282 aaKnown RBP17.2■□□□□ 0.34
NUP54-214ENST00000514307 SLC18A3Q16572 532 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 TRIM71Q2Q1W2 868 aaKnown RBP17.2■□□□□ 0.34
NUP54-214ENST00000514307 ASTE1Q2TB18 679 aaPredicted RBP17.2■□□□□ 0.34
NUP54-214ENST00000514307 FBXO47Q5MNV8 452 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 TMEM192Q8IY95 271 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 TTC39CQ8N584 583 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 BEST2Q8NFU1 509 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 DESI2Q9BSY9 194 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 EIF2AQ9BY44 585 aaKnown RBP17.2■□□□□ 0.34
NUP54-214ENST00000514307 MTMR12Q9C0I1 747 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 TRPV6Q9H1D0 765 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 DPP3Q9NY33 737 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 PCDHA13Q9Y5I0 950 aa17.2■□□□□ 0.34
NUP54-214ENST00000514307 RBAK-RBAKDNI3L0D1 243 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 KIF5CO60282 957 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 SGPL1O95470 568 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 KRT19P08727 400 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 TNNT1P13805 278 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 MYL6P60660 151 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 MYO1EQ12965 1108 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 CUL2Q13617 745 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 MTFR1Q15390 333 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 UBXN11Q5T124 520 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 ALKAL1Q6UXT8 129 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 PGBD4Q96DM1 585 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 KIF12Q96FN5 646 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 AGPAT1Q99943 283 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 PI4K2AQ9BTU6 479 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 TRAIPQ9BWF2 469 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 FAM124BQ9H5Z6 455 aaPredicted RBP17.19■□□□□ 0.34
NUP54-214ENST00000514307 ERVK-5Q9HDB9 667 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 UBN1Q9NPG3 1134 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 ADAMTS1Q9UHI8 967 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 PADI3Q9ULW8 664 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 PCDHB2Q9Y5E7 798 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 KAT6AQ92794 2004 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 PTPRJQ12913 1337 aa17.19■□□□□ 0.34
NUP54-214ENST00000514307 USP27XA6NNY8 438 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 ZNF623O75123 536 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 PLEKP08567 350 aaPredicted RBP17.18■□□□□ 0.34
NUP54-214ENST00000514307 CKBP12277 381 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 ITGA4P13612 1032 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 KRT5P13647 590 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 KCNE1P15382 129 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 ATF7P17544 494 aaPredicted RBP17.18■□□□□ 0.34
NUP54-214ENST00000514307 ZNF699Q32M78 642 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 ZNF667Q5HYK9 610 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 ZNF618Q5T7W0 954 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 ZNF571Q7Z3V5 609 aaPredicted RBP17.18■□□□□ 0.34
NUP54-214ENST00000514307 EFCAB13Q8IY85 973 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 ACRBPQ8NEB7 543 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 KREMEN1Q96MU8 473 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 IFIH1Q9BYX4 1025 aaKnown RBP17.18■□□□□ 0.34
NUP54-214ENST00000514307 GPR88Q9GZN0 384 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 DNAI2Q9GZS0 605 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 CNTN3Q9P232 1028 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 MYO1AQ9UBC5 1043 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 AJAP1Q9UKB5 411 aaPredicted RBP17.18■□□□□ 0.34
NUP54-214ENST00000514307 UBQLN1Q9UMX0 589 aaKnown RBP17.18■□□□□ 0.34
NUP54-214ENST00000514307 IPPQ9Y573 584 aa17.18■□□□□ 0.34
NUP54-214ENST00000514307 LRRN2O75325 713 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 STAU1O95793 577 aaKnown RBP17.17■□□□□ 0.34
NUP54-214ENST00000514307 MYCP01106 439 aaPredicted RBP17.17■□□□□ 0.34
NUP54-214ENST00000514307 NFICP08651 508 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 CYP3A5P20815 502 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 VAV2P52735 878 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 ETF1P62495 437 aaKnown RBP17.17■□□□□ 0.34
NUP54-214ENST00000514307 NOP14P78316 857 aaKnown RBP17.17■□□□□ 0.34
NUP54-214ENST00000514307 LPIN1Q14693 890 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 NAB2Q15742 525 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 ZBTB6Q15916 424 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 XKR4Q5GH76 650 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 CCDC122Q5T0U0 273 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.17■□□□□ 0.34
NUP54-214ENST00000514307 NYAP1Q6ZVC0 841 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 MRPL10Q7Z7H8 261 aaKnown RBP17.17■□□□□ 0.34
NUP54-214ENST00000514307 ZNF677Q86XU0 584 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 KIF18AQ8NI77 898 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 WNT8BQ93098 351 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 SNX27Q96L92 541 aa17.17■□□□□ 0.34
NUP54-214ENST00000514307 APOL6Q9BWW8 343 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms