RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 CHRNA4P43681 627 aa8□□□□□ -1.13
USP46-208ENST00000512656 MRE11P49959 708 aa8□□□□□ -1.13
USP46-208ENST00000512656 ANAPC15P60006 121 aa8□□□□□ -1.13
USP46-208ENST00000512656 LAMTOR4Q0VGL1 99 aa8□□□□□ -1.13
USP46-208ENST00000512656 SCRN1Q12765 414 aa8□□□□□ -1.13
USP46-208ENST00000512656 TFDP1Q14186 410 aa8□□□□□ -1.13
USP46-208ENST00000512656 MXD4Q14582 209 aaPredicted RBP8□□□□□ -1.13
USP46-208ENST00000512656 PRRT3Q5FWE3 981 aa8□□□□□ -1.13
USP46-208ENST00000512656 ATAT1Q5SQI0 421 aa8□□□□□ -1.13
USP46-208ENST00000512656 PLA2G4FQ68DD2 849 aa8□□□□□ -1.13
USP46-208ENST00000512656 ELMSAN1Q6PJG2 1045 aa8□□□□□ -1.13
USP46-208ENST00000512656 PIK3AP1Q6ZUJ8 805 aa8□□□□□ -1.13
USP46-208ENST00000512656 MRPL10Q7Z7H8 261 aaKnown RBP8□□□□□ -1.13
USP46-208ENST00000512656 KSR1Q8IVT5 923 aa8□□□□□ -1.13
USP46-208ENST00000512656 UBALD2Q8IYN6 164 aa8□□□□□ -1.13
USP46-208ENST00000512656 LPPQ93052 612 aa8□□□□□ -1.13
USP46-208ENST00000512656 CCDC51Q96ER9 411 aa8□□□□□ -1.13
USP46-208ENST00000512656 IGSF21Q96ID5 467 aa8□□□□□ -1.13
USP46-208ENST00000512656 CCDC43Q96MW1 224 aaKnown RBP8□□□□□ -1.13
USP46-208ENST00000512656 FAM193BQ96PV7 902 aaPredicted RBP8□□□□□ -1.13
USP46-208ENST00000512656 LXNQ9BS40 222 aa8□□□□□ -1.13
USP46-208ENST00000512656 GBP3Q9H0R5 595 aa8□□□□□ -1.13
USP46-208ENST00000512656 ZBP1Q9H171 429 aa8□□□□□ -1.13
USP46-208ENST00000512656 DHX33Q9H6R0 707 aaKnown RBP8□□□□□ -1.13
USP46-208ENST00000512656 TBC1D13Q9NVG8 400 aa8□□□□□ -1.13
USP46-208ENST00000512656 ORC3Q9UBD5 711 aaPredicted RBP8□□□□□ -1.13
USP46-208ENST00000512656 PCDHB2Q9Y5E7 798 aa8□□□□□ -1.13
USP46-208ENST00000512656 M0R082 166 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 ERLIN2O94905 339 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 GALTP07902 379 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 AXLP30530 894 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 KRT2P35908 639 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 NPEPPSP55786 919 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 EMC2Q15006 297 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 LONRF3Q496Y0 759 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 XKR9Q5GH70 373 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 RARS2Q5T160 578 aaKnown RBP7.99□□□□□ -1.13
USP46-208ENST00000512656 NCAPH2Q6IBW4 605 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 CABP7Q86V35 215 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 HACE1Q8IYU2 909 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 ZNF417Q8TAU3 575 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 TMEM143Q96AN5 459 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 ZNF587Q96SQ5 575 aaPredicted RBP7.99□□□□□ -1.13
USP46-208ENST00000512656 TMEM175Q9BSA9 504 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 EMILIN2Q9BXX0 1053 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 NRDE2Q9H7Z3 1164 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 VRTNQ9H8Y1 702 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 RSAD1Q9HA92 442 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 IFT122Q9HBG6 1241 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 DPP7Q9UHL4 492 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 SORCS3Q9UPU3 1222 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 USTQ9Y2C2 406 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 SSX2IPQ9Y2D8 614 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 FAN1Q9Y2M0 1017 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 STARD13Q9Y3M8 1113 aa7.99□□□□□ -1.13
USP46-208ENST00000512656 RIF1Q5UIP0 2472 aaKnown RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 WDR81Q562E7 1941 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 LYPLA2O95372 231 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 ITGA4P13612 1032 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 NCLP19338 710 aaKnown RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 SP100P23497 879 aaPredicted RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 KLRC2P26717 231 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 SLC11A1P49279 550 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 POU5F1BQ06416 359 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 MTMR3Q13615 1198 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 TRIM29Q14134 588 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 CALCRLQ16602 461 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 CRTC2Q53ET0 693 aaPredicted RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 KIAA1841Q6NSI8 718 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 NOTUMQ6P988 496 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 AGMOQ6ZNB7 445 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 FERMT3Q86UX7 667 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 TMEM173Q86WV6 379 aaPredicted RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 ANKMY2Q8IV38 441 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 TPH2Q8IWU9 490 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 ZDHHC14Q8IZN3 488 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 TDRD5Q8NAT2 981 aaKnown RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 RNF149Q8NC42 400 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 KREMEN2Q8NCW0 462 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 HAS1Q92839 578 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 ACSF2Q96CM8 615 aaPredicted RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 DYDC2Q96IM9 177 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 TRIM6Q9C030 488 aaPredicted RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 POMKQ9H5K3 350 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 MRPL17Q9NRX2 175 aaKnown RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 ANKEF1Q9NU02 776 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 RGL1Q9NZL6 768 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 DBR1Q9UK59 544 aaKnown RBP7.98□□□□□ -1.13
USP46-208ENST00000512656 TPCN1Q9ULQ1 816 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 PCDHA12Q9UN75 941 aa7.98□□□□□ -1.13
USP46-208ENST00000512656 PTPRZ1P23471 2315 aaPredicted RBP7.97□□□□□ -1.13
USP46-208ENST00000512656 MEIS3P2A8K0S8 358 aa7.97□□□□□ -1.13
USP46-208ENST00000512656 C2CD4DB7Z1M9 353 aa7.97□□□□□ -1.13
USP46-208ENST00000512656 TGFBR3LH3BV60 316 aa7.97□□□□□ -1.13
USP46-208ENST00000512656 INO80B-WBP1J3KQ70 363 aa7.97□□□□□ -1.13
USP46-208ENST00000512656 URODP06132 367 aa7.97□□□□□ -1.13
USP46-208ENST00000512656 FURINP09958 794 aa7.97□□□□□ -1.13
USP46-208ENST00000512656 EPCAMP16422 314 aa7.97□□□□□ -1.13
USP46-208ENST00000512656 AVPR2P30518 371 aa7.97□□□□□ -1.13
USP46-208ENST00000512656 HOXA11P31270 313 aaPredicted RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms