RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 GPC3P51654 580 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 BNIP1Q12981 228 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 DNAJC3Q13217 504 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 GLIS1Q8NBF1 620 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 DDX27Q96GQ7 796 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 TRAIPQ9BWF2 469 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 KIF9Q9HAQ2 790 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 PIAS1O75925 651 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 CCNE2O96020 404 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 OAS1P00973 400 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 MGAT5Q09328 741 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 PTK6Q13882 451 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 SLC39A4Q6P5W5 647 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 IWS1Q96ST2 819 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 RBM15Q96T37 977 aaKnown RBP eCLIP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ATP6V0A4Q9HBG4 840 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 GREB1LQ9C091 1923 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 EIF4E1BA6NMX2 242 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 MAPTP10636 758 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 TNNI1P19237 187 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 DMP1Q13316 513 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 MTM1Q13496 603 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 GALNTL6Q49A17 601 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 SLC27A3Q5K4L6 730 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 CGB2Q6NT52 195 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 KCNV2Q8TDN2 545 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 OSBPL8Q9BZF1 889 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ETNK1Q9HBU6 452 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 SLCO1B3Q9NPD5 702 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 EXOC7Q9UPT5 735 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 COQ4Q9Y3A0 265 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 YDJCA8MPS7 323 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 C21orf2O43822 256 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 CDH16O75309 829 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ETS1P14921 441 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 WDR4P57081 412 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ECHDC2Q86YB7 292 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 TAB3Q8N5C8 712 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 HAUS1Q96CS2 278 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 CEP170P1Q96L14 293 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 CCDC77Q9BR77 488 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 SAYSD1Q9NPB0 183 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 SKAP2O75563 359 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 UNGP13051 313 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 DSG3P32926 999 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 P3H1Q32P28 736 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 TMEM63BQ5T3F8 832 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 TLDC1Q6P9B6 456 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ARHGEF18Q6ZSZ5 1173 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ANO5Q75V66 913 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 FAM160B2Q86V87 743 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ERICH1Q86X53 443 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 C4orf33Q8N1A6 199 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ACSF2Q96CM8 615 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ZNF341Q9BYN7 854 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 C1orf112Q9NSG2 853 aa9.84□□□□□ -0.83
LIMCH1-215ENST00000512632 ATRNL1Q5VV63 1379 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 ATF7P17544 494 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 TAC1P20366 129 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 CAP2P40123 477 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 MAGEA4P43358 317 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 ACOT2P49753 483 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 CYP24A1Q07973 514 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 DLGAP5Q15398 846 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 RPAINQ86UA6 219 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 VSIG1Q86XK7 387 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 SYTL5Q8TDW5 730 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 GRK7Q8WTQ7 553 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 ZNF516Q92618 1163 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 SLCO2A1Q92959 643 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 MIEF2Q96C03 454 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 FHDC1Q9C0D6 1143 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 ADAM22Q9P0K1 906 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 ZNF148Q9UQR1 794 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 TELO2Q9Y4R8 837 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 ZNF536O15090 1300 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 MYPNQ86TC9 1320 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 H0YIN7 160 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 KRT15P19012 456 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 MSH2P43246 934 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 NCKAP1LP55160 1127 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 PSMC5P62195 406 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 RPS6P62753 249 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 CCDC89Q8N998 374 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 SLC17A8Q8NDX2 589 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 CLEC4DQ8WXI8 215 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 RSRC1Q96IZ7 334 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 RXFP1Q9HBX9 757 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 ZNF70Q9UC06 446 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 UBIAD1Q9Y5Z9 338 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 TAF1LQ8IZX4 1826 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 EXOC1LA0A1B0GW35 172 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 IFNB1P01574 187 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 FDX1P10109 184 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 HSD17B4P51659 736 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 RIPK1Q13546 671 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 FASTKD3Q14CZ7 662 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 MAP4K3Q8IVH8 894 aa9.83□□□□□ -0.84
LIMCH1-215ENST00000512632 FEM1BQ9UK73 627 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms