RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 GRIN2CQ14957 1233 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 TMEM132DQ14C87 1099 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 JADE1Q6IE81 842 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 KLHL10Q6JEL2 608 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 ZC3H3Q8IXZ2 948 aaKnown RBP12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 KLHL23Q8NBE8 558 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 RDH13Q8NBN7 331 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 TMC2Q8TDI7 906 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 NELFBQ8WX92 580 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 C18orf25Q96B23 403 aaPredicted RBP12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 DDX27Q96GQ7 796 aaKnown RBP12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 UROC1Q96N76 676 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 COLEC11Q9BWP8 271 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 RYDENQ9NUL5 291 aaKnown RBP12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 UBQLN1Q9UMX0 589 aaKnown RBP12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 FRMD4BQ9Y2L6 1034 aa12.91□□□□□ -0.34
PDLIM5-208ENST00000504489 CDH23Q9H251 3354 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 C2orf72A6NCS6 295 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 EPOPA6NHQ4 379 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 NT5C1B-RDH14C9J2C7 533 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 TMEM189-UBE2V1I3L0A0 370 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 CETN3O15182 167 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 ITGB1P05556 798 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 NFICP08651 508 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 RPL9P32969 192 aaKnown RBP12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 PBX3P40426 434 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 CASP4P49662 377 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 WNT7BP56706 349 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 UBE3AQ05086 875 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 SPAG1Q07617 926 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 PAK1Q13153 545 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 PSMD6Q15008 389 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 NFKBIBQ15653 356 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 CT47A1Q5JQC4 288 aaPredicted RBP12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 SPATA1Q5VX52 437 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 CEP135Q66GS9 1140 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 TTI2Q6NXR4 508 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 CAVIN1Q6NZI2 390 aaKnown RBP12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 EFCAB13Q8IY85 973 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 DEFB123Q8N688 67 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 BEST2Q8NFU1 509 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 SPPL3Q8TCT6 385 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 TMEM169Q96HH4 297 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 IGSF21Q96ID5 467 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 MKNK1Q9BUB5 465 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 LMAN2LQ9H0V9 348 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 PRDM12Q9H4Q4 367 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 PDE11AQ9HCR9 933 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 DACH1Q9UI36 760 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 CTNND2Q9UQB3 1225 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 LZTS1Q9Y250 596 aa12.9□□□□□ -0.34
PDLIM5-208ENST00000504489 PLXNA3P51805 1871 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 TRIM49BA6NDI0 452 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 CASTOR2A6NHX0 329 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 LPXNO60711 386 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 AKAP3O75969 853 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 LETM1O95202 739 aaPredicted RBP12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 LRPAP1P30533 357 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 PSMC2P35998 433 aaKnown RBP12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 CLCNKBP51801 687 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 MCCD1P59942 119 aaPredicted RBP12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 KRT17Q04695 432 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 ENPEPQ07075 957 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 UPP1Q16831 310 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 DPCR1Q3MIW9 517 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 DCLRE1AQ6PJP8 1040 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 SASS6Q6UVJ0 657 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 Q7L0L9 218 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 TMEM173Q86WV6 379 aaPredicted RBP12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 PARD3BQ8TEW8 1205 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 CACTINQ8WUQ7 758 aaKnown RBP12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 DUSP9Q99956 384 aaKnown RBP12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 PAAF1Q9BRP4 392 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 GOLGA2P5Q9HBQ8 144 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 ALG13Q9NP73 1137 aaKnown RBP12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 INTS13Q9NVM9 706 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 MARCH5Q9NX47 278 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 MTMR10Q9NXD2 777 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 CACNG4Q9UBN1 327 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 STK39Q9UEW8 545 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 TUBGCP4Q9UGJ1 667 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 RWDD2AQ9UIY3 292 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 PRG3Q9Y2Y8 225 aaPredicted RBP12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 MYH10P35580 1976 aa12.89□□□□□ -0.35
PDLIM5-208ENST00000504489 BRWD1Q9NSI6 2320 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 RFXAPO00287 272 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 GRM6O15303 877 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 EFEMP2O95967 443 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 POU3F3P20264 500 aaPredicted RBP12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 ERCC5P28715 1186 aaPredicted RBP12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 CLDN10P78369 228 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 INTS8Q75QN2 995 aaKnown RBP12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 FILIP1Q7Z7B0 1213 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 DDX53Q86TM3 631 aaKnown RBP12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 WDR49Q8IV35 697 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 FAM186BQ8IYM0 893 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 GDPD5Q8WTR4 605 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 BCL7CQ8WUZ0 217 aaPredicted RBP12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 CCDC127Q96BQ5 260 aa12.88□□□□□ -0.35
PDLIM5-208ENST00000504489 CEP63Q96MT8 703 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms