RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CNGA1P29973 690 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 GJA4P35212 333 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 RABGGTBP53611 331 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 CACNB3P54284 484 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 EPHA5P54756 1037 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 PFKPQ01813 784 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 TNFAIP1Q13829 316 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 DCTN1Q14203 1278 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 CCL14Q16627 93 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 ZNF568Q3ZCX4 644 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 FIGNQ5HY92 759 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 PTRH1Q86Y79 214 aaKnown RBP4.91□□□□□ -1.62
USP54-217ENST00000498213 KBTBD2Q8IY47 623 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 STPG3Q8N7X2 389 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 CCDC191Q8NCU4 936 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 CHST13Q8NET6 341 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 PCDH19Q8TAB3 1148 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 WDR48Q8TAF3 677 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 SREK1Q8WXA9 508 aaKnown RBP4.91□□□□□ -1.62
USP54-217ENST00000498213 MKL1Q969V6 931 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 MAGEB10Q96LZ2 347 aaPredicted RBP4.91□□□□□ -1.62
USP54-217ENST00000498213 DNAJC2Q99543 621 aaKnown RBP4.91□□□□□ -1.62
USP54-217ENST00000498213 COA1Q9GZY4 146 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 TLR9Q9NR96 1032 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 SMPD4Q9NXE4 827 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 TSPYL4Q9UJ04 414 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 TELO2Q9Y4R8 837 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 COL4A6Q14031 1691 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 REV3LO60673 3130 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 SPTBN2O15020 2390 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 OTOFQ9HC10 1997 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 LAMB2P55268 1798 aa4.91□□□□□ -1.62
USP54-217ENST00000498213 NUP98P52948 1817 aa4.9□□□□□ -1.62
USP54-217ENST00000498213 LTBP2Q14767 1821 aa4.9□□□□□ -1.62
USP54-217ENST00000498213 NPEPPSL1A6NEC2 478 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 PRR23AA6NEV1 266 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 ZNF839A8K0R7 811 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 ARVCFO00192 962 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 DNM1LO00429 736 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 DDX58O95786 925 aaKnown RBP4.9□□□□□ -1.63
USP54-217ENST00000498213 ITGB3P05106 788 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 ZKSCAN1P17029 563 aaPredicted RBP4.9□□□□□ -1.63
USP54-217ENST00000498213 NFATC3Q12968 1075 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 RAB30Q15771 203 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 CCDC152Q4G0S7 254 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 ANO1Q5XXA6 986 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 C16orf59Q7L2K0 433 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 COPS6Q7L5N1 327 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 RALYLQ86SE5 291 aaKnown RBP4.9□□□□□ -1.63
USP54-217ENST00000498213 OSTM1Q86WC4 334 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 PROSER1Q86XN7 944 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 ADSSL1Q8N142 457 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 CISD2Q8N5K1 135 aaKnown RBP4.9□□□□□ -1.63
USP54-217ENST00000498213 IGDCC4Q8TDY8 1250 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 THAP3Q8WTV1 239 aaPredicted RBP4.9□□□□□ -1.63
USP54-217ENST00000498213 CDC5LQ99459 802 aaKnown RBP4.9□□□□□ -1.63
USP54-217ENST00000498213 TACO1Q9BSH4 297 aaKnown RBP4.9□□□□□ -1.63
USP54-217ENST00000498213 ISCA1Q9BUE6 129 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 OSBPL2Q9H1P3 480 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 SLC39A2Q9NP94 309 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 WASF3Q9UPY6 502 aa4.9□□□□□ -1.63
USP54-217ENST00000498213 FAM208BQ5VWN6 2430 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 USP24Q9UPU5 2620 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 CCDC163A0A0D9SF12 145 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 WNT9AO14904 365 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 AKAP8O43823 692 aaKnown RBP4.89□□□□□ -1.63
USP54-217ENST00000498213 B4GALT3O60512 393 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 B4GALT4O60513 344 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 PQBP1O60828 265 aaKnown RBP4.89□□□□□ -1.63
USP54-217ENST00000498213 CLTBP09497 229 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 TNFRSF1AP19438 455 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 KCNA5P22460 613 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 ADCYAP1R1P41586 468 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 FKBP1AP62942 108 aaKnown RBP4.89□□□□□ -1.63
USP54-217ENST00000498213 ADAM17P78536 824 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 ZXDAP98168 799 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 DBPQ10586 325 aaPredicted RBP4.89□□□□□ -1.63
USP54-217ENST00000498213 PROSER3Q2NL68 480 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 TMEM240Q5SV17 173 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 NUDT10Q8NFP7 164 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 NUDT11Q96G61 164 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 CBLCQ9ULV8 474 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 MED23Q9ULK4 1368 aa4.89□□□□□ -1.63
USP54-217ENST00000498213 ANKRD36CQ5JPF3 1778 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 ZFYVE26Q68DK2 2539 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 CHD7Q9P2D1 2997 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 TCRBV5S4A2TA0A5A2 114 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 EPOPA6NHQ4 379 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 ACOT7O00154 380 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 MAN2B1O00754 1011 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 KCNK3O14649 394 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 KIAA0355O15063 1070 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 PDE8AO60658 829 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 KNG1P01042 644 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 PCCAP05165 728 aaPredicted RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 EIF2S2P20042 333 aaKnown RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 TMPOP42166 694 aaKnown RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 CCT4P50991 539 aaKnown RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 RIPK4P57078 832 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 JAM2P57087 298 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms