RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 GALTP07902 379 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 KRT19P08727 400 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 IGFBP6P24592 240 aaPredicted RBP12.87□□□□□ -0.35
CUX1-210ENST00000497815 ALDH7A1P49419 539 aaKnown RBP12.87□□□□□ -0.35
CUX1-210ENST00000497815 ZBTB6Q15916 424 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 DUOXA2Q1HG44 320 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 KCNT2Q6UVM3 1135 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 FRMD5Q7Z6J6 570 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 USP37Q86T82 979 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 DHX40Q8IX18 779 aaKnown RBP12.87□□□□□ -0.35
CUX1-210ENST00000497815 TMC2Q8TDI7 906 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 HASPINQ8TF76 798 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 ZNF516Q92618 1163 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 BORCS6Q96GS4 357 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 ANKRD36BP1Q96IX9 119 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 TSPAN18Q96SJ8 248 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 BPIFA3Q9BQP9 254 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 TMEM175Q9BSA9 504 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 THAP9Q9H5L6 903 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 CBX8Q9HC52 389 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 METTL14Q9HCE5 456 aaKnown RBP12.87□□□□□ -0.35
CUX1-210ENST00000497815 AAASQ9NRG9 546 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 MAGEC2Q9UBF1 373 aaPredicted RBP12.87□□□□□ -0.35
CUX1-210ENST00000497815 FAN1Q9Y2M0 1017 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 PCDHB12Q9Y5F1 795 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 RALGAPA2Q2PPJ7 1873 aa12.87□□□□□ -0.35
CUX1-210ENST00000497815 BECN2A8MW95 431 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 KCNJ18B7U540 433 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 PODXLO00592 558 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 PPEF2O14830 753 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 PHACTR2O75167 634 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 CLSTN1O94985 981 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 ITGB3P05106 788 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 LINC00271P0C7V0 271 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 BMPR1AP36894 532 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 MTIF2P46199 727 aaKnown RBP12.86□□□□□ -0.35
CUX1-210ENST00000497815 GCLMP48507 274 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 BIRC3Q13489 604 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 KCNJ12Q14500 433 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 NCAPHQ15003 741 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 EPC2Q52LR7 807 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 C1orf220Q5T0J3 134 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 SCARA3Q6AZY7 606 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 TMEM173Q86WV6 379 aaPredicted RBP12.86□□□□□ -0.35
CUX1-210ENST00000497815 NT5DC4Q86YG4 428 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 IRF2BP1Q8IU81 584 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 FAM114A1Q8IWE2 563 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 C1orf127Q8N9H9 656 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 ARNTL2Q8WYA1 636 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 CLP1Q92989 425 aaKnown RBP12.86□□□□□ -0.35
CUX1-210ENST00000497815 LRCH3Q96II8 777 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 UROC1Q96N76 676 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 TGS1Q96RS0 853 aaKnown RBP12.86□□□□□ -0.35
CUX1-210ENST00000497815 COLEC11Q9BWP8 271 aa12.86□□□□□ -0.35
CUX1-210ENST00000497815 SMTNL1A8MU46 457 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 B3GAT3O94766 335 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 CSPG5O95196 566 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 KIF4AO95239 1232 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 ITGB1P05556 798 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 CYP3A5P20815 502 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 POLR2BP30876 1174 aaKnown RBP12.85□□□□□ -0.35
CUX1-210ENST00000497815 RPL9P32969 192 aaKnown RBP12.85□□□□□ -0.35
CUX1-210ENST00000497815 ZNF445P59923 1031 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 CLDN10P78369 228 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 PPP3CAQ08209 521 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 UPP1Q16831 310 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 C9orf57Q5W0N0 161 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 TRAPPC11Q7Z392 1133 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 LUZP1Q86V48 1076 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 TRIM59Q8IWR1 403 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 SLC39A11Q8N1S5 342 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 KLHL23Q8NBE8 558 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 C3orf58Q8NDZ4 430 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 FBXO22Q8NEZ5 403 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 BCL7CQ8WUZ0 217 aaPredicted RBP12.85□□□□□ -0.35
CUX1-210ENST00000497815 DDX27Q96GQ7 796 aaKnown RBP12.85□□□□□ -0.35
CUX1-210ENST00000497815 MARCH5Q9NX47 278 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 SPG21Q9NZD8 308 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 ITGA11Q9UKX5 1188 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 AGAP1Q9UPQ3 857 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 R3HCC1Q9Y3T6 440 aaKnown RBP12.85□□□□□ -0.35
CUX1-210ENST00000497815 RWDD3Q9Y3V2 267 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.85□□□□□ -0.35
CUX1-210ENST00000497815 ANK1P16157 1881 aa12.85□□□□□ -0.35
CUX1-210ENST00000497815 CITO14578 2027 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 TDRD15B5MCY1 1934 aaKnown RBP12.84□□□□□ -0.35
CUX1-210ENST00000497815 RANBP2P49792 3224 aaKnown RBP12.84□□□□□ -0.35
CUX1-210ENST00000497815 I3L4J1 428 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 IKBKBO14920 756 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 STX10O60499 249 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 TADA2AO75478 443 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 FGF18O76093 207 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 CAVIN2O95810 425 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 CDK11BP21127 795 aaKnown RBP12.84□□□□□ -0.35
CUX1-210ENST00000497815 LRPAP1P30533 357 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 MARSP56192 900 aaKnown RBP12.84□□□□□ -0.35
CUX1-210ENST00000497815 ERVK-21P61565 698 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 RBP5P82980 135 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 IQCB1Q15051 598 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 TCP11X2Q5H9J9 407 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms