RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CHP1Q99653 195 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 TMEM106CQ9BVX2 250 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 EFCAB8A8MWE9 144 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 MYO1FO00160 1098 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 LSM8O95777 96 aaKnown RBP8.95□□□□□ -0.98
USP54-215ENST00000497106 KCNMA1Q12791 1236 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 DNAJC24Q6P3W2 148 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 DSTYKQ6XUX3 929 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 CEP128Q6ZU80 1094 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 RSPH1Q8WYR4 309 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 RNF186Q9NXI6 227 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 ADGRA2Q96PE1 1338 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 AOC2O75106 756 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 HOXD8P13378 290 aaPredicted RBP8.95□□□□□ -0.98
USP54-215ENST00000497106 ATP4AP20648 1035 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 TAF6P49848 677 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 CDR2Q01850 454 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 ZACNQ401N2 412 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 SGO2Q562F6 1265 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 HSP90B2PQ58FF3 399 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 NYAP1Q6ZVC0 841 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 TAS1R2Q8TE23 839 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 DDX27Q96GQ7 796 aaKnown RBP8.95□□□□□ -0.98
USP54-215ENST00000497106 FIZ1Q96SL8 496 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 C16orf70Q9BSU1 422 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 HDAC6Q9UBN7 1215 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 DCDC2CA8MYV0 355 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 RIOK3O14730 519 aaKnown RBP8.95□□□□□ -0.98
USP54-215ENST00000497106 STBD1O95210 358 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 CYBAP13498 195 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 CYP27A1Q02318 531 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 PTK7Q13308 1070 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 SMC1AQ14683 1233 aaKnown RBP8.95□□□□□ -0.98
USP54-215ENST00000497106 CCL14Q16627 93 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 HEXIM2Q96MH2 286 aaKnown RBP8.95□□□□□ -0.98
USP54-215ENST00000497106 PRKAG2Q9UGJ0 569 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 CYP26A1O43174 497 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CD58P19256 250 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CTNNA2P26232 953 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CDR1P51861 262 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 NBPF20Q3BBV1 942 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 ERICH1Q86X53 443 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 BAP1Q92560 729 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 SEPT8Q92599 483 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 HPDLQ96IR7 371 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 MED10Q9BTT4 135 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 FTHL17Q9BXU8 183 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 TTYH3Q9C0H2 523 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 FEZ2Q9UHY8 353 aaPredicted RBP8.94□□□□□ -0.98
USP54-215ENST00000497106 GNEQ9Y223 722 aaKnown RBP8.94□□□□□ -0.98
USP54-215ENST00000497106 COQ4Q9Y3A0 265 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 TRAPPC3O43617 180 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 BUB1O43683 1085 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 SLC1A1P43005 524 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 RNASELQ05823 741 aaKnown RBP8.94□□□□□ -0.98
USP54-215ENST00000497106 PPP3CAQ08209 521 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 TMEM62Q0P6H9 643 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CBWD6Q4V339 395 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CBWD3Q5JTY5 395 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CBWD5Q5RIA9 395 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 LMBRD2Q68DH5 695 aaPredicted RBP8.94□□□□□ -0.98
USP54-215ENST00000497106 GLB1LQ6UWU2 654 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CXCL17Q6UXB2 119 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 SCARA5Q6ZMJ2 495 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 FGD4Q96M96 766 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 TRIM62Q9BVG3 475 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 MTMR12Q9C0I1 747 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 ADAM22Q9P0K1 906 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 PJA2O43164 708 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CAPN15O75808 1086 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 PAEPP09466 180 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CTSHP09668 335 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 MAN1A1P33908 653 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 DNA2P51530 1060 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 PURAQ00577 322 aaKnown RBP8.94□□□□□ -0.98
USP54-215ENST00000497106 WDR72Q3MJ13 1102 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 KIAA0319LQ8IZA0 1049 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 APPL2Q8NEU8 664 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 OR6B3Q8NGW1 331 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CPB2Q96IY4 423 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.94□□□□□ -0.98
USP54-215ENST00000497106 KANSL3Q9P2N6 904 aa8.94□□□□□ -0.98
USP54-215ENST00000497106 CPSF3Q9UKF6 684 aaKnown RBP8.94□□□□□ -0.98
USP54-215ENST00000497106 GRID2IPA4D2P6 1211 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 BTNL10A8MVZ5 291 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 GLYCTKQ8IVS8 523 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 REXO1L1PQ8IX06 675 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 UROC1Q96N76 676 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 NT5C1AQ9BXI3 368 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 UPF3AQ9H1J1 476 aaKnown RBP8.93□□□□□ -0.98
USP54-215ENST00000497106 CNOT8Q9UFF9 292 aaKnown RBP8.93□□□□□ -0.98
USP54-215ENST00000497106 CDY2AQ9Y6F7 541 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 CXCL8P10145 99 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 DMTNQ08495 405 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 PLCD3Q8N3E9 789 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 ARHGAP20Q9P2F6 1191 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 GTF2IRD1Q9UHL9 959 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 GTF3C4Q9UKN8 822 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 DSEQ9UL01 958 aa8.93□□□□□ -0.98
USP54-215ENST00000497106 SQORQ9Y6N5 450 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms