RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 VWA3BQ502W6 1294 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 PAN2Q504Q3 1202 aaKnown RBP16.1■□□□□ 0.17
ACTB-213ENST00000493945 HSP90AA4PQ58FG1 418 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 WDR44Q5JSH3 913 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 CRIPAKQ8N1N5 446 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 TAF4BQ92750 862 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 SLC35C1Q96A29 364 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 FAM81BQ96LP2 452 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 COLEC11Q9BWP8 271 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 MMRN2Q9H8L6 949 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 LIMA1Q9UHB6 759 aaKnown RBP16.1■□□□□ 0.17
ACTB-213ENST00000493945 NUB1Q9Y5A7 615 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 PCDHB12Q9Y5F1 795 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 PCDHA11Q9Y5I1 949 aa16.1■□□□□ 0.17
ACTB-213ENST00000493945 MEIS3P2A8K0S8 358 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 PTGESO14684 152 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 PMM2O15305 246 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 LRPAP1P30533 357 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 ATICP31939 592 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 FMO5P49326 533 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 MCCD1P59942 119 aaPredicted RBP16.09■□□□□ 0.17
ACTB-213ENST00000493945 BMS1Q14692 1282 aaKnown RBP16.09■□□□□ 0.17
ACTB-213ENST00000493945 KRT31Q15323 416 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 ZACNQ401N2 412 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 SV2CQ496J9 727 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 C9orf50Q5SZB4 431 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 CHRDL2Q6WN34 429 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 EFCAB13Q8IY85 973 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 LRRC52Q8N7C0 313 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 FBXL13Q8NEE6 735 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 ZSWIM2Q8NEG5 633 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 ZNF689Q96CS4 500 aaPredicted RBP16.09■□□□□ 0.17
ACTB-213ENST00000493945 BORCS6Q96GS4 357 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 ZNF558Q96NG5 402 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 MED15Q96RN5 788 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 NDST4Q9H3R1 872 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 TAB2Q9NYJ8 693 aa16.09■□□□□ 0.17
ACTB-213ENST00000493945 GOLGA6L3A6NEY3 463 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 PODXLO00592 558 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 ALDH2P05091 517 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 OR1G1P47890 313 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 GCLMP48507 274 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 TAF6P49848 677 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 COPB1P53618 953 aaKnown RBP16.08■□□□□ 0.16
ACTB-213ENST00000493945 PLCB2Q00722 1185 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 PRPF38BQ5VTL8 546 aaKnown RBP16.08■□□□□ 0.16
ACTB-213ENST00000493945 GBP6Q6ZN66 633 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 TRAPPC11Q7Z392 1133 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 IRF2BP1Q8IU81 584 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 ANP32BQ92688 251 aaKnown RBP16.08■□□□□ 0.16
ACTB-213ENST00000493945 RC3H2Q9HBD1 1191 aaKnown RBP16.08■□□□□ 0.16
ACTB-213ENST00000493945 RNF19AQ9NV58 838 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 FAN1Q9Y2M0 1017 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 DAAM1Q9Y4D1 1078 aa16.08■□□□□ 0.16
ACTB-213ENST00000493945 CASTOR2A6NHX0 329 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 LGALS16A8MUM7 142 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 ITGB3P05106 788 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 UBASH3AP57075 661 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 TNNC1P63316 161 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 DSC1Q08554 894 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 NCOA4Q13772 614 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 ZBTB6Q15916 424 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 SGSM1Q2NKQ1 1148 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 ZNF699Q32M78 642 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 LMBRD2Q68DH5 695 aaPredicted RBP16.07■□□□□ 0.16
ACTB-213ENST00000493945 DCLRE1AQ6PJP8 1040 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 SV2AQ7L0J3 742 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 GSTCDQ8NEC7 633 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 SP7Q8TDD2 431 aaPredicted RBP16.07■□□□□ 0.16
ACTB-213ENST00000493945 IQCDQ96DY2 449 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 TMEM169Q96HH4 297 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 FAXDC2Q96IV6 333 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 ZMAT2Q96NC0 199 aaKnown RBP16.07■□□□□ 0.16
ACTB-213ENST00000493945 GCNT4Q9P109 453 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 TUBGCP4Q9UGJ1 667 aa16.07■□□□□ 0.16
ACTB-213ENST00000493945 SF3B1O75533 1304 aaKnown RBP eCLIP16.07■□□□□ 0.161e-7■■□□□ 14.2
ACTB-213ENST00000493945 NLRC5Q86WI3 1866 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 LRRC10BA6NIK2 292 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 TMEM189-UBE2V1I3L0A0 370 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 B3GAT3O94766 335 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 RFX1P22670 979 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 POLR2BP30876 1174 aaKnown RBP16.06■□□□□ 0.16
ACTB-213ENST00000493945 YWHAEP62258 255 aaKnown RBP16.06■□□□□ 0.16
ACTB-213ENST00000493945 DLG4P78352 724 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 FANCCQ00597 558 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 UBXN1Q04323 297 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 KRT17Q04695 432 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 EXOC3L4Q17RC7 722 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 TDRD10Q5VZ19 366 aaKnown RBP16.06■□□□□ 0.16
ACTB-213ENST00000493945 C9orf57Q5W0N0 161 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 COLGALT2Q8IYK4 626 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 TTC39CQ8N584 583 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 C1orf127Q8N9H9 656 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 PCMTD1Q96MG8 357 aaPredicted RBP16.06■□□□□ 0.16
ACTB-213ENST00000493945 POP1Q99575 1024 aaKnown RBP16.06■□□□□ 0.16
ACTB-213ENST00000493945 PLVAPQ9BX97 442 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 VPS16Q9H269 839 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 RAB20Q9NX57 234 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 DSEQ9UL01 958 aa16.06■□□□□ 0.16
ACTB-213ENST00000493945 AGAP1Q9UPQ3 857 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms