RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 TMC2Q8TDI7 906 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 PARD3BQ8TEW8 1205 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 BORCS6Q96GS4 357 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 CGRRF1Q99675 332 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 ASB7Q9H672 318 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 TBC1D13Q9NVG8 400 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 TAB2Q9NYJ8 693 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 HCSTQ9UBK5 93 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 RAPGEFL1Q9UHV5 662 aa18.61■□□□□ 0.57
LIME1-208ENST00000493265 NCOR1O75376 2440 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 RFXAPO00287 272 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 TLL1O43897 1013 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 GJB5O95377 273 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 CA3P07451 260 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 TMEM191BP0C7N4 346 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 PRKCSHP14314 528 aaPredicted RBP18.6■□□□□ 0.57
LIME1-208ENST00000493265 KCNE1P15382 129 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 GCLMP48507 274 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 POU5F1Q01860 360 aaKnown RBP18.6■□□□□ 0.57
LIME1-208ENST00000493265 BTG3Q14201 252 aaPredicted RBP18.6■□□□□ 0.57
LIME1-208ENST00000493265 USP37Q86T82 979 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 OR5B17Q8NGF7 314 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 PHOSPHO2Q8TCD6 241 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 RABGGTAQ92696 567 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 FAM193BQ96PV7 902 aaPredicted RBP18.6■□□□□ 0.57
LIME1-208ENST00000493265 MTMR12Q9C0I1 747 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 HSD3B7Q9H2F3 369 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 CERS4Q9HA82 394 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 GOLGA2P5Q9HBQ8 144 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 CACNG4Q9UBN1 327 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 TUBGCP4Q9UGJ1 667 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.6■□□□□ 0.57
LIME1-208ENST00000493265 ANK1P16157 1881 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 RALGAPA2Q2PPJ7 1873 aa18.6■□□□□ 0.57
LIME1-208ENST00000493265 TNNC2P02585 160 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 TFF2Q03403 129 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 GRIK3Q13003 919 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 BIRC3Q13489 604 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 SKIV2LQ15477 1246 aaKnown RBP18.59■□□□□ 0.57
LIME1-208ENST00000493265 XKR4Q5GH76 650 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 C1orf220Q5T0J3 134 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 SPOUT1Q5T280 376 aaKnown RBP18.59■□□□□ 0.57
LIME1-208ENST00000493265 ZNF280BQ86YH2 543 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 WDR49Q8IV35 697 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 TRIM59Q8IWR1 403 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 ANKRD20A12PQ8NF67 263 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 BEST2Q8NFU1 509 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 CACTINQ8WUQ7 758 aaKnown RBP18.59■□□□□ 0.57
LIME1-208ENST00000493265 ZNF516Q92618 1163 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 ANKRD36BP1Q96IX9 119 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 NECAB3Q96P71 396 aaPredicted RBP18.59■□□□□ 0.57
LIME1-208ENST00000493265 PPP1R10Q96QC0 940 aaKnown RBP18.59■□□□□ 0.57
LIME1-208ENST00000493265 TUBGCP2Q9BSJ2 902 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 VPS16Q9H269 839 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 INTS13Q9NVM9 706 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 KANSL3Q9P2N6 904 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 PRRC2BQ5JSZ5 2229 aaKnown RBP18.59■□□□□ 0.57
LIME1-208ENST00000493265 BDP1A6H8Y1 2624 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 TRIP11Q15643 1979 aa18.59■□□□□ 0.57
LIME1-208ENST00000493265 TRANK1O15050 2925 aa18.58■□□□□ 0.57
LIME1-208ENST00000493265 CASTOR2A6NHX0 329 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 PHACTR2O75167 634 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 DDHD2O94830 711 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 CLSTN1O94985 981 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 ZNF18P17022 549 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 EEF1GP26641 437 aaKnown RBP18.58■□□□□ 0.56
LIME1-208ENST00000493265 MARSP56192 900 aaKnown RBP18.58■□□□□ 0.56
LIME1-208ENST00000493265 SOX4Q06945 474 aaPredicted RBP18.58■□□□□ 0.56
LIME1-208ENST00000493265 PPP3CAQ08209 521 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 KRT31Q15323 416 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 DUOXA2Q1HG44 320 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 LRRC43Q8N309 656 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 SLC35C1Q96A29 364 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 MRPL9Q9BYD2 267 aaKnown RBP18.58■□□□□ 0.56
LIME1-208ENST00000493265 SLC38A7Q9NVC3 462 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 DPP3Q9NY33 737 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 UBQLN1Q9UMX0 589 aaKnown RBP18.58■□□□□ 0.56
LIME1-208ENST00000493265 DERAQ9Y315 318 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 C2CD2Q9Y426 696 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 INSL6Q9Y581 213 aa18.58■□□□□ 0.56
LIME1-208ENST00000493265 FNDC1Q4ZHG4 1894 aaPredicted RBP18.57■□□□□ 0.56
LIME1-208ENST00000493265 INPPL1O15357 1258 aa18.57■□□□□ 0.56
LIME1-208ENST00000493265 XPOTO43592 962 aaKnown RBP18.57■□□□□ 0.56
LIME1-208ENST00000493265 B4GALT3O60512 393 aa18.57■□□□□ 0.56
LIME1-208ENST00000493265 ZC3H11AO75152 810 aaKnown RBP eCLIP18.57■□□□□ 0.56
LIME1-208ENST00000493265 TPM2P07951 284 aa18.57■□□□□ 0.56
LIME1-208ENST00000493265 KRT19P08727 400 aa18.57■□□□□ 0.56
LIME1-208ENST00000493265 PLCB2Q00722 1185 aa18.57■□□□□ 0.56
LIME1-208ENST00000493265 MAN2A1Q16706 1144 aa18.57■□□□□ 0.56
LIME1-208ENST00000493265 ZNF689Q96CS4 500 aaPredicted RBP18.57■□□□□ 0.56
LIME1-208ENST00000493265 RAD9AQ99638 391 aa18.57■□□□□ 0.56
LIME1-208ENST00000493265 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.57■□□□□ 0.567e-7■■■■■ 94.2
LIME1-208ENST00000493265 DNAJB4Q9UDY4 337 aa18.57■□□□□ 0.56
LIME1-208ENST00000493265 COL4A4P53420 1690 aaPredicted RBP18.57■□□□□ 0.56
LIME1-208ENST00000493265 TDRD15B5MCY1 1934 aaKnown RBP18.57■□□□□ 0.56
LIME1-208ENST00000493265 XIRP2A4UGR9 3374 aa18.56■□□□□ 0.56
LIME1-208ENST00000493265 LCHNA4D1U4 455 aa18.56■□□□□ 0.56
LIME1-208ENST00000493265 EPOPA6NHQ4 379 aa18.56■□□□□ 0.56
LIME1-208ENST00000493265 STX10O60499 249 aa18.56■□□□□ 0.56
LIME1-208ENST00000493265 SERPINC1P01008 464 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms