RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TMEM270Q6UE05 265 aa22.58■■□□□ 1.2
CCDC88B-208ENST00000492980 ADAT2Q7Z6V5 191 aaKnown RBP22.58■■□□□ 1.2
CCDC88B-208ENST00000492980 CPA5Q8WXQ8 436 aa22.58■■□□□ 1.2
CCDC88B-208ENST00000492980 ZBTB10Q96DT7 871 aa22.58■■□□□ 1.2
CCDC88B-208ENST00000492980 SH3GL2Q99962 352 aa22.58■■□□□ 1.2
CCDC88B-208ENST00000492980 CELF4Q9BZC1 486 aaKnown RBP22.58■■□□□ 1.2
CCDC88B-208ENST00000492980 FAM204AQ9H8W3 233 aa22.58■■□□□ 1.2
CCDC88B-208ENST00000492980 AVENQ9NQS1 362 aaPredicted RBP22.58■■□□□ 1.2
CCDC88B-208ENST00000492980 GOLGA6L10A0A0M3HER8 536 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 IQCA1LA6NCM1 817 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 SPOPO43791 374 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 HSF2BPO75031 334 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 TFDP1Q14186 410 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 PPP2R5EQ16537 467 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 EFCAB12Q6NXP0 572 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 TAPT1Q6NXT6 567 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 TSHZ1Q6ZSZ6 1077 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 DDX42Q86XP3 938 aaKnown RBP eCLIP22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 SEC14L1Q92503 715 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 NLRP4Q96MN2 994 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 FZD8Q9H461 694 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 RNPEPQ9H4A4 650 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 PTPRHQ9HD43 1115 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 PDHXO00330 501 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 MYBL1P10243 752 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 CLCN3P51790 818 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 CCNA1P78396 465 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 HLTFQ14527 1009 aaKnown RBP eCLIP22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 UBR7Q8N806 425 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 RBBP8NLQ8NC74 664 aaPredicted RBP22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 ZNF668Q96K58 619 aaPredicted RBP22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 MTMR12Q9C0I1 747 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 ZNF408Q9H9D4 720 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 ERAP1Q9NZ08 941 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 PCDHA3Q9Y5H8 950 aa22.57■■□□□ 1.2
CCDC88B-208ENST00000492980 CCDC66A2RUB6 948 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 ACKR2O00590 384 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 ASS1P00966 412 aaKnown RBP22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 CST3P01034 146 aaPredicted RBP22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 CFHP08603 1231 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 ADORA2AP29274 412 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 GNA15P30679 374 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 GJC2Q5T442 439 aaPredicted RBP22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 MPZL3Q6UWV2 235 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 CYFIP2Q96F07 1278 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 TRIM11Q96F44 468 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 MS4A4AQ96JQ5 239 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 ZIM3Q96PE6 472 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 ZSWIM8A7E2V4 1837 aa22.56■■□□□ 1.2
CCDC88B-208ENST00000492980 C22orf31O95567 290 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 HSPA6P17066 643 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 RRM1P23921 792 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 NSFP46459 744 aaKnown RBP22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 KCTD19Q17RG1 926 aaPredicted RBP22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 SEL1L2Q5TEA6 688 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 ATF7IP2Q5U623 682 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 TRIM72Q6ZMU5 477 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 MON1BQ7L1V2 547 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 PNMA8AQ86V59 439 aaPredicted RBP22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 ABRAQ8N0Z2 381 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 IMPG2Q9BZV3 1241 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 NEUROG2Q9H2A3 272 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 ANAPC7Q9UJX3 599 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 SLC45A1Q9Y2W3 748 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 MROH7Q68CQ1 1323 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 ANK1P16157 1881 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 EVPLQ92817 2033 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 UNCXA6NJT0 531 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 B4GALT5O43286 388 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 DAPK3O43293 454 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 PYGMP11217 842 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 HSPA9P38646 679 aaKnown RBP22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 MBTD1Q05BQ5 628 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 LAMC2Q13753 1193 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 SURF1Q15526 300 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 MAMDC4Q6UXC1 1216 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 IQCKQ8N0W5 287 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 FAM212AQ96EL1 285 aa22.55■■□□□ 1.2
CCDC88B-208ENST00000492980 BTBD19C9JJ37 291 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 INO80B-WBP1J3KQ70 363 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 OPA1O60313 960 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 LGALS2P05162 132 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 POTEJP0CG39 1038 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 CETPP11597 493 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 MAPK4P31152 587 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 ZNF132P52740 706 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 NOMO3P69849 1222 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 PIK3R5Q8WYR1 880 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 TRIM51Q9BSJ1 452 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 INO80BQ9C086 356 aaPredicted RBP22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 MINDY3Q9H8M7 445 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 VTA1Q9NP79 307 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 ASAP2O43150 1006 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 HOXC6P09630 235 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 LMAN1P49257 510 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 MYL6P60660 151 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 DR1Q01658 176 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 DUOXA2Q1HG44 320 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 ZNF568Q3ZCX4 644 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 ZNF484Q5JVG2 852 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms