RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 RNPEPL1Q9HAU8 725 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 ARMCX1Q9P291 453 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 PSMC3IPQ9P2W1 217 aaPredicted RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 NDC80O14777 642 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 MGRN1O60291 552 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 CHKAP35790 457 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 DYNC1I2Q13409 638 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 PKN2Q16513 984 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 SMTNL2Q2TAL5 461 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 MAP3K21Q5TCX8 1036 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 ARID3BQ8IVW6 561 aaPredicted RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 WDR75Q8IWA0 830 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 FITM2Q8N6M3 262 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 ATXN2LQ8WWM7 1075 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 HES6Q96HZ4 224 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 TBC1D10AQ9BXI6 508 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 NINJ2Q9NZG7 142 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 SUGT1Q9Y2Z0 365 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 ZNF335Q9H4Z2 1342 aaPredicted RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 TCRBV7S2A1N4TA0A589 114 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 NOL3O60936 208 aaKnown RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 TMEM191BP0C7N4 346 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 CACNA2D1P54289 1103 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 SNRNP35Q16560 246 aaKnown RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 OLFML2BQ68BL8 750 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 RNF168Q8IYW5 571 aaPredicted RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 LRRC15Q8TF66 581 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 PPP1R36Q96LQ0 422 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 MANSC1Q9H8J5 431 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 C2CD2Q9Y426 696 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 ATXN2Q99700 1313 aaKnown RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 PPIP5K2O43314 1243 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 SERPINB2P05120 415 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 LAMB3Q13751 1172 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 CEP55Q53EZ4 464 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 HSP90AA5PQ58FG0 334 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 PCGF5Q86SE9 256 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 PALB2Q86YC2 1186 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 CBWD2Q8IUF1 395 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 LRRC43Q8N309 656 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 CEP120Q8N960 986 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 RMDN2Q96LZ7 410 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 RANBP17Q9H2T7 1088 aaKnown RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 RHBDL2Q9NX52 303 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 SENP1Q9P0U3 644 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 GTF3C4Q9UKN8 822 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 TRAF3IP3Q9Y228 551 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 APOBEC2Q9Y235 224 aaKnown RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 SCINQ9Y6U3 715 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 NOP56O00567 594 aaKnown RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 NT5C2P49902 561 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 SEPT6Q14141 434 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 TRIP10Q15642 601 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 KLHL38Q2WGJ6 581 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 LACTB2Q53H82 288 aaPredicted RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 PPP6R3Q5H9R7 873 aaPredicted RBP13.56□□□□□ -0.24
SHOX2-205ENST00000490689 ARHGEF19Q8IW93 802 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 TRIM42Q8IWZ5 723 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 CKAP2Q8WWK9 683 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 SPOCK2Q92563 424 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 MKNK1Q9BUB5 465 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 RIOX1Q9H6W3 641 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 GPRC5CQ9NQ84 441 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 ABCC6O95255 1503 aa13.56□□□□□ -0.24
SHOX2-205ENST00000490689 E2F8A0AVK6 867 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 UNC5CO95185 931 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 PTDSS1P48651 473 aaKnown RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 MED21Q13503 144 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 MMEL1Q495T6 779 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 APOL6Q9BWW8 343 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 ZC3H4Q9UPT8 1303 aaKnown RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 RBAK-RBAKDNI3L0D1 243 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 NUDT17P0C025 328 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 ATP6V1B1P15313 513 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 RFX1P22670 979 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 BRD2P25440 801 aaKnown RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 ACOT2P49753 483 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 DBN1Q16643 649 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 PCNX4Q63HM2 1172 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 LRGUKQ96M69 825 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 TRIM56Q9BRZ2 755 aaKnown RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 TDRD3Q9H7E2 651 aaKnown RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 NGRNQ9NPE2 291 aaKnown RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 TOPORSQ9NS56 1045 aaPredicted RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 IGSF9BQ9UPX0 1349 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 NDUFB10O96000 172 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 SERPINB3P29508 390 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 TPD52P55327 224 aaPredicted RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 ASTE1Q2TB18 679 aaPredicted RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 CCDC14Q49A88 953 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 NME8Q8N427 588 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 DCLK2Q8N568 766 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 TRIML2Q8N7C3 387 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 SCG3Q8WXD2 468 aaKnown RBP13.55□□□□□ -0.24
SHOX2-205ENST00000490689 SCYL1Q96KG9 808 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 WHRNQ9P202 907 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 SLC9A2Q9UBY0 812 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 NARFQ9UHQ1 456 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 ZNF711Q9Y462 761 aa13.55□□□□□ -0.24
SHOX2-205ENST00000490689 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms