RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 HOXD13P35453 343 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 WNT7BP56706 349 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 PSMD5Q16401 504 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 HVCN1Q96D96 273 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 FAM212AQ96EL1 285 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 KIF12Q96FN5 646 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 C7orf25Q9BPX7 421 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 CUEDC2Q9H467 287 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 RPF1Q9H9Y2 349 aaKnown RBP19.74■□□□□ 0.75
COL9A3-214ENST00000490398 GDPD2Q9HCC8 539 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 FAM13BQ9NYF5 915 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 FNIP2Q9P278 1114 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 KCNH3Q9ULD8 1083 aa19.74■□□□□ 0.75
COL9A3-214ENST00000490398 VWA8A3KMH1 1905 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 GLUD1P00367 558 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 NFICP08651 508 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 AFMP43652 599 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 ASIC1P78348 528 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 CUL4BQ13620 913 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 JADE1Q6IE81 842 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.73■□□□□ 0.75
COL9A3-214ENST00000490398 CCDC65Q8IXS2 484 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 DDX27Q96GQ7 796 aaKnown RBP19.73■□□□□ 0.75
COL9A3-214ENST00000490398 SPATA32Q96LK8 384 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 ACCSQ96QU6 501 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 PLEKHA5Q9HAU0 1116 aa19.73■□□□□ 0.75
COL9A3-214ENST00000490398 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.73■□□□□ 0.75
COL9A3-214ENST00000490398 AGO2Q9UKV8 859 aaKnown RBP19.73■□□□□ 0.75
COL9A3-214ENST00000490398 ACTN4O43707 911 aaKnown RBP19.72■□□□□ 0.75
COL9A3-214ENST00000490398 PFKFB1P16118 471 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 KRT85P78386 507 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 ITIH3Q06033 890 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 PPP2R3AQ06190 1150 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 BECN1Q14457 450 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 CNNM4Q6P4Q7 775 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 GPR149Q86SP6 731 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 RNF135Q8IUD6 432 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 GPR65Q8IYL9 337 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 POMGNT1Q8WZA1 660 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 SAAL1Q96ER3 474 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 FAM84AQ96KN4 292 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 CBWD1Q9BRT8 395 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 SFXN1Q9H9B4 322 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 C11orf16Q9NQ32 467 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 PCDHB13Q9Y5F0 798 aa19.72■□□□□ 0.75
COL9A3-214ENST00000490398 PI4K2BG5E9Z4 385 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 RPL9P32969 192 aaKnown RBP19.71■□□□□ 0.75
COL9A3-214ENST00000490398 ABCD1P33897 745 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 EHHADHQ08426 723 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 ELAVL2Q12926 359 aaKnown RBP19.71■□□□□ 0.75
COL9A3-214ENST00000490398 SCARA3Q6AZY7 606 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 CES5AQ6NT32 575 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 EPM2AIP1Q7L775 607 aaPredicted RBP19.71■□□□□ 0.75
COL9A3-214ENST00000490398 ZNF707Q96C28 371 aaPredicted RBP19.71■□□□□ 0.75
COL9A3-214ENST00000490398 PCIF1Q9H4Z3 704 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 MTRRQ9UBK8 725 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 MUTYHQ9UIF7 546 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 UBQLN1Q9UMX0 589 aaKnown RBP19.71■□□□□ 0.75
COL9A3-214ENST00000490398 HPSEQ9Y251 543 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 CITO14578 2027 aa19.71■□□□□ 0.75
COL9A3-214ENST00000490398 GOLGA8IPA6NC78 632 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 FAM86C2PA6NEL3 165 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 GOLGA8JA6NMD2 632 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 CMA1P23946 247 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 LRPAP1P30533 357 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 OR1D2P34982 312 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 KYAT1Q16773 422 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 VARS2Q5ST30 1063 aaKnown RBP19.7■□□□□ 0.74
COL9A3-214ENST00000490398 SPATA1Q5VX52 437 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 SLFN12LQ6IEE8 588 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 EFCAB13Q8IY85 973 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 KREMEN2Q8NCW0 462 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 POP1Q99575 1024 aaKnown RBP19.7■□□□□ 0.74
COL9A3-214ENST00000490398 FAM213AQ9BRX8 229 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 LRRC27Q9C0I9 530 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 GOLPH3LQ9H4A5 285 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 CDY1Q9Y6F8 540 aa19.7■□□□□ 0.74
COL9A3-214ENST00000490398 PDCD11Q14690 1871 aaKnown RBP19.69■□□□□ 0.74
COL9A3-214ENST00000490398 CCDC195A0A1B0GUA6 201 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 SPDYE4A6NLX3 237 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 C2CD4DB7Z1M9 353 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 SPTLC1O15269 473 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 KLRC4O43908 158 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 CYP3A5P20815 502 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 MTHFRP42898 656 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 NDUFA8P51970 172 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 AMPD3Q01432 767 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 FAM26FQ5R3K3 315 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 ATAT1Q5SQI0 421 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 UNC13DQ70J99 1090 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 SYCP3Q8IZU3 236 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 PAGE5Q96GU1 130 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 SUSD3Q96L08 255 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 RIPOR3Q96MK2 946 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 MAGEF1Q9HAY2 307 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 TSHZ2Q9NRE2 1034 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 FBXW11Q9UKB1 542 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 EXOC7Q9UPT5 735 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 NUB1Q9Y5A7 615 aa19.69■□□□□ 0.74
COL9A3-214ENST00000490398 TIMM13Q9Y5L4 95 aaPredicted RBP19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms