RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 FAM13BQ9NYF5 915 aa15.15■□□□□ 0.02
SYNE1-226ENST00000488376 PRKAG3Q9UGI9 489 aa15.15■□□□□ 0.02
SYNE1-226ENST00000488376 FAM50BQ9Y247 325 aa15.15■□□□□ 0.02
SYNE1-226ENST00000488376 TGM5O43548 720 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 RFPL2O75678 378 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 ADH1AP07327 375 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 ADRB2P07550 413 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 NFICP08651 508 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 PPP2R3AQ06190 1150 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 PSMD5Q16401 504 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 JADE1Q6IE81 842 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 PPFIBP1Q86W92 1011 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 CCDC65Q8IXS2 484 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 PIK3R5Q8WYR1 880 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 SAAL1Q96ER3 474 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 DDX27Q96GQ7 796 aaKnown RBP15.14■□□□□ 0.01
SYNE1-226ENST00000488376 RPGRIP1Q96KN7 1286 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 ACCSQ96QU6 501 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 CBWD1Q9BRT8 395 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 RPF1Q9H9Y2 349 aaKnown RBP15.14■□□□□ 0.01
SYNE1-226ENST00000488376 PLEKHA5Q9HAU0 1116 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 FNIP2Q9P278 1114 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 AGO2Q9UKV8 859 aaKnown RBP15.14■□□□□ 0.01
SYNE1-226ENST00000488376 HPSEQ9Y251 543 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 BDP1A6H8Y1 2624 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 PLXNA3P51805 1871 aa15.14■□□□□ 0.01
SYNE1-226ENST00000488376 GOLGA8IPA6NC78 632 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 GOLGA8JA6NMD2 632 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 LOC730098B7Z3J9 87 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 GLUD1P00367 558 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 NDUFA8P51970 172 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 EHHADHQ08426 723 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 SCARA3Q6AZY7 606 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 CNNM4Q6P4Q7 775 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 LILRA6Q6PI73 481 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.13■□□□□ 0.01
SYNE1-226ENST00000488376 POMGNT1Q8WZA1 660 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 PHF7Q9BWX1 381 aaPredicted RBP15.13■□□□□ 0.01
SYNE1-226ENST00000488376 DZANK1Q9NVP4 752 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 SSX2IPQ9Y2D8 614 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 TRIP11Q15643 1979 aa15.13■□□□□ 0.01
SYNE1-226ENST00000488376 VWA8A3KMH1 1905 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 CMA1P23946 247 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 RPL9P32969 192 aaKnown RBP15.12■□□□□ 0.01
SYNE1-226ENST00000488376 ABCD1P33897 745 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 ELAVL2Q12926 359 aaKnown RBP15.12■□□□□ 0.01
SYNE1-226ENST00000488376 EPM2AIP1Q7L775 607 aaPredicted RBP15.12■□□□□ 0.01
SYNE1-226ENST00000488376 EFCAB13Q8IY85 973 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 SYCP3Q8IZU3 236 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 PAGE5Q96GU1 130 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 FAM213AQ9BRX8 229 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 PCIF1Q9H4Z3 704 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 SFXN1Q9H9B4 322 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 PCDHB13Q9Y5F0 798 aa15.12■□□□□ 0.01
SYNE1-226ENST00000488376 KLRC4O43908 158 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 SLFN14P0C7P3 912 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 PRR29P0C7W0 189 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 LRPAP1P30533 357 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 MCM4P33991 863 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 AMPD3Q01432 767 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 ITIH3Q06033 890 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 FAM26FQ5R3K3 315 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 SLFN12LQ6IEE8 588 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 UNC13DQ70J99 1090 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 GPR149Q86SP6 731 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 RNF135Q8IUD6 432 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 GPR65Q8IYL9 337 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 ZNF707Q96C28 371 aaPredicted RBP15.11■□□□□ 0.01
SYNE1-226ENST00000488376 LRRC27Q9C0I9 530 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 MAGEF1Q9HAY2 307 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 C11orf16Q9NQ32 467 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 TSHZ2Q9NRE2 1034 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.11■□□□□ 0.01
SYNE1-226ENST00000488376 MTRRQ9UBK8 725 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 MUTYHQ9UIF7 546 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 UBQLN1Q9UMX0 589 aaKnown RBP15.11■□□□□ 0.01
SYNE1-226ENST00000488376 EXOC7Q9UPT5 735 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 NUB1Q9Y5A7 615 aa15.11■□□□□ 0.01
SYNE1-226ENST00000488376 PDCD11Q14690 1871 aaKnown RBP15.1■□□□□ 0.01
SYNE1-226ENST00000488376 FAM237AA0A1B0GTK4 181 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 CCDC195A0A1B0GUA6 201 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 FAM86C2PA6NEL3 165 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 SPDYE4A6NLX3 237 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 C2CD4DB7Z1M9 353 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 SPTLC1O15269 473 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 TGFB1I1O43294 461 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 OR1D2P34982 312 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 ALCAMQ13740 583 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 TMEM132DQ14C87 1099 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 KYAT1Q16773 422 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 VARS2Q5ST30 1063 aaKnown RBP15.1■□□□□ 0.01
SYNE1-226ENST00000488376 SPATA1Q5VX52 437 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 CES5AQ6NT32 575 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 NELFCDQ8IXH7 590 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 CEP57L1Q8IYX8 460 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 FSIP1Q8NA03 581 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 KREMEN2Q8NCW0 462 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 NOC3LQ8WTT2 800 aaKnown RBP15.1■□□□□ 0.01
SYNE1-226ENST00000488376 SCFD1Q8WVM8 642 aa15.1■□□□□ 0.01
SYNE1-226ENST00000488376 SUSD3Q96L08 255 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms