RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 GUCY1A2P33402 732 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 ADCYAP1R1P41586 468 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 IL2P60568 153 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 PCBP1Q15365 356 aaKnown RBP eCLIP4.82□□□□□ -1.64
SMC4-220ENST00000488017 TCEA2Q15560 299 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 MTX3Q5HYI7 312 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 TSTD2Q5T7W7 516 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 ZNF529Q6P280 563 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 SEM1Q6ZVN7 128 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 FKBP9P1Q75LS8 142 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 AHI1Q8N157 1196 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 PPM1KQ8N3J5 372 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 CASKIN2Q8WXE0 1202 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 SLC5A5Q92911 643 aa4.82□□□□□ -1.64
SMC4-220ENST00000488017 MARS2Q96GW9 593 aaKnown RBP4.82□□□□□ -1.64
SMC4-220ENST00000488017 UHRF1Q96T88 793 aaPredicted RBP4.82□□□□□ -1.64
SMC4-220ENST00000488017 GSG1L2A8MUP6 293 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 TEX33O43247 280 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 ALAS1P13196 640 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 EXOSC10Q01780 885 aaKnown RBP4.81□□□□□ -1.64
SMC4-220ENST00000488017 FSCN1Q16658 493 aaKnown RBP4.81□□□□□ -1.64
SMC4-220ENST00000488017 CNNM4Q6P4Q7 775 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 CRELD2Q6UXH1 353 aaPredicted RBP4.81□□□□□ -1.64
SMC4-220ENST00000488017 PQLC1Q8N2U9 271 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 VGLL2Q8N8G2 317 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 SEMA6DQ8NFY4 1073 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 FBXO18Q8NFZ0 1043 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 EAF2Q96CJ1 260 aaPredicted RBP4.81□□□□□ -1.64
SMC4-220ENST00000488017 SEMA4CQ9C0C4 833 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 KANSL2Q9H9L4 492 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 EMC7Q9NPA0 242 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 LANCL2Q9NS86 450 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 FBXO34Q9NWN3 711 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 HSFX1Q9UBD0 423 aa4.81□□□□□ -1.64
SMC4-220ENST00000488017 LINC01548A6NM66 108 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 TP73O15350 636 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 KRTAP5-9P26371 169 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 ALDH1A3P47895 512 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 PER3P56645 1201 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 PTPRRQ15256 657 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 SEPT7Q16181 437 aaKnown RBP4.8□□□□□ -1.64
SMC4-220ENST00000488017 FITM2Q8N6M3 262 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 Q8NA96 180 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 FBXL20Q96IG2 436 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 ACAP3Q96P50 834 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 SENP6Q9GZR1 1112 aaPredicted RBP4.8□□□□□ -1.64
SMC4-220ENST00000488017 DPP7Q9UHL4 492 aa4.8□□□□□ -1.64
SMC4-220ENST00000488017 A0A1W2PS29 197 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 E9PSI1 815 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 CBSLP0DN79 551 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 CBSP35520 551 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 TUBA4AP68366 448 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 PDCD1Q15116 288 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.79□□□□□ -1.64
SMC4-220ENST00000488017 KRTAP5-4Q6L8H1 288 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 HOXB13Q92826 284 aaPredicted RBP4.79□□□□□ -1.64
SMC4-220ENST00000488017 NINJ1Q92982 152 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 FATE1Q969F0 183 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 RPL36ALQ969Q0 106 aaKnown RBP4.79□□□□□ -1.64
SMC4-220ENST00000488017 MRFAP1L1Q96HT8 127 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 PGBD1Q96JS3 809 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 RBM12Q9NTZ6 932 aaKnown RBP4.79□□□□□ -1.64
SMC4-220ENST00000488017 TMEM140Q9NV12 185 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 INTS13Q9NVM9 706 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 SLC23A1Q9UHI7 598 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 SCOCQ9UIL1 159 aa4.79□□□□□ -1.64
SMC4-220ENST00000488017 GCOM1H8Y6P7 765 aaPredicted RBP4.78□□□□□ -1.64
SMC4-220ENST00000488017 ELFN1P0C7U0 828 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 PRR35P0CG20 571 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 ENPP1P22413 925 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 NOMO3P69849 1222 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 MRPS9P82933 396 aaKnown RBP4.78□□□□□ -1.64
SMC4-220ENST00000488017 CDK17Q00537 523 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 GRM1Q13255 1194 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 NOMO1Q15155 1222 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 ADRM1Q16186 407 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 KLHL22Q53GT1 634 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 NOMO2Q5JPE7 1267 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 ZNF626Q68DY1 528 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 AMIGO2Q86SJ2 522 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 STON2Q8WXE9 905 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 TFAP2BQ92481 460 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 ZNF48Q96MX3 618 aaPredicted RBP4.78□□□□□ -1.64
SMC4-220ENST00000488017 ADGRE3Q9BY15 652 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 GREM2Q9H772 168 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 BTBD3Q9Y2F9 522 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 CD2APQ9Y5K6 639 aa4.78□□□□□ -1.64
SMC4-220ENST00000488017 KELP23276 732 aa4.77□□□□□ -1.65
SMC4-220ENST00000488017 BMS1Q14692 1282 aaKnown RBP4.77□□□□□ -1.65
SMC4-220ENST00000488017 SF3A1Q15459 793 aaKnown RBP4.77□□□□□ -1.65
SMC4-220ENST00000488017 FAM153CQ494X1 144 aa4.77□□□□□ -1.65
SMC4-220ENST00000488017 UBE3BQ7Z3V4 1068 aa4.77□□□□□ -1.65
SMC4-220ENST00000488017 HOMEZQ8IX15 550 aa4.77□□□□□ -1.65
SMC4-220ENST00000488017 AUTS2Q8WXX7 1259 aa4.77□□□□□ -1.65
SMC4-220ENST00000488017 AJAP1Q9UKB5 411 aaPredicted RBP4.77□□□□□ -1.65
SMC4-220ENST00000488017 ADAM21Q9UKJ8 722 aa4.77□□□□□ -1.65
SMC4-220ENST00000488017 EDARQ9UNE0 448 aa4.77□□□□□ -1.65
SMC4-220ENST00000488017 ZNF521Q96K83 1311 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 PRAMEF33A0A0G2JMD5 474 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 ADM5C9JUS6 153 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms