RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 ATRNL1Q5VV63 1379 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 LTBP4Q8N2S1 1624 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 CCDC189A1A4V9 331 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 ABHD2P08910 425 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 RALAP11233 206 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 POLGP54098 1239 aaPredicted RBP12.98□□□□□ -0.33
COL3A1-206ENST00000487010 PEX3P56589 373 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 PARP6Q2NL67 630 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 ANKRD20A2Q5SQ80 823 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 ANKRD20A1Q5TYW2 823 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 ANKRD20A3Q5VUR7 823 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 FAM47EQ6ZV65 393 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 TAS1R2Q8TE23 839 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 SAAL1Q96ER3 474 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 HEMGNQ9BXL5 484 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 ARHGEF10LQ9HCE6 1279 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 DHX15O43143 795 aaKnown RBP12.97□□□□□ -0.33
COL3A1-206ENST00000487010 ASMTLO95671 621 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 CALCAP01258 141 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 MYBL1P10243 752 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 KRT5P13647 590 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 NPR1P16066 1061 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 MAGEA4P43358 317 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 YARSP54577 528 aaKnown RBP12.97□□□□□ -0.33
COL3A1-206ENST00000487010 FKBP1AP62942 108 aaKnown RBP12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TMED2Q15363 201 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 STRIP1Q5VSL9 837 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TMC2Q8TDI7 906 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 ACER1Q8TDN7 264 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 CHURC1Q8WUH1 139 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 ELMO3Q96BJ8 720 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 PAIP2Q9BPZ3 127 aaKnown RBP12.97□□□□□ -0.33
COL3A1-206ENST00000487010 LRMDAQ9H2I8 198 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 KCNH7Q9NS40 1196 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TOPORSQ9NS56 1045 aaPredicted RBP12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TOM1O60784 492 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 ENTPD3O75355 529 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 LYPLA2O95372 231 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 KLRC2P26717 231 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 QARSP47897 775 aaKnown RBP12.97□□□□□ -0.33
COL3A1-206ENST00000487010 NR1H3Q13133 447 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 SETDB1Q15047 1291 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TBC1D10BQ4KMP7 808 aaPredicted RBP12.97□□□□□ -0.33
COL3A1-206ENST00000487010 GRIPAP1Q4V328 841 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 DACT2Q5SW24 774 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 CEP128Q6ZU80 1094 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 PHLDB2Q86SQ0 1253 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 PRUNE1Q86TP1 453 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TRABD2AQ86V40 505 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 ZCCHC9Q8N567 271 aaKnown RBP12.97□□□□□ -0.33
COL3A1-206ENST00000487010 DENND1AQ8TEH3 1009 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 CPA5Q8WXQ8 436 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TRIM11Q96F44 468 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 ANKRD27Q96NW4 1050 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 FAM118BQ9BPY3 351 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 SH2D3AQ9BRG2 576 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TIPINQ9BVW5 301 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 FOXP3Q9BZS1 431 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TDRD3Q9H7E2 651 aaKnown RBP12.97□□□□□ -0.33
COL3A1-206ENST00000487010 UBN1Q9NPG3 1134 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 GPRC5CQ9NQ84 441 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 SERPINA10Q9UK55 444 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 PHTF1Q9UMS5 762 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 EXOC7Q9UPT5 735 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 TMX2Q9Y320 296 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 USH1CQ9Y6N9 552 aa12.97□□□□□ -0.33
COL3A1-206ENST00000487010 MYPNQ86TC9 1320 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 GSTTP1A0A1W2PQM5 241 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 LIN7AO14910 233 aaPredicted RBP12.96□□□□□ -0.33
COL3A1-206ENST00000487010 SPAG7O75391 227 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 SKAP2O75563 359 aaPredicted RBP12.96□□□□□ -0.33
COL3A1-206ENST00000487010 SMNDC1O75940 238 aaKnown RBP eCLIP12.96□□□□□ -0.33
COL3A1-206ENST00000487010 PROSCO94903 275 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 GCAP28676 217 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 ALDH1B1P30837 517 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 YWHABP31946 246 aaKnown RBP12.96□□□□□ -0.33
COL3A1-206ENST00000487010 GTF2H1P32780 548 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 MOGSQ13724 837 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 DAB2IPQ5VWQ8 1189 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 CYP4F22Q6NT55 531 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 RGS9BPQ6ZS82 235 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 ENOSF1Q7L5Y1 443 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 VSIG1Q86XK7 387 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 AGGF1Q8N302 714 aaeCLIP12.96□□□□□ -0.33
COL3A1-206ENST00000487010 LARGE2Q8N3Y3 721 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 SLC17A8Q8NDX2 589 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 ERP27Q96DN0 273 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 MFSD14AQ96MC6 490 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 CFAP57Q96MR6 1250 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 RBM15Q96T37 977 aaKnown RBP eCLIP12.96□□□□□ -0.33
COL3A1-206ENST00000487010 TMX4Q9H1E5 349 aaPredicted RBP12.96□□□□□ -0.33
COL3A1-206ENST00000487010 TBX20Q9UMR3 447 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 CHKBQ9Y259 395 aa12.96□□□□□ -0.33
COL3A1-206ENST00000487010 EXOC1LA0A1B0GW35 172 aa12.95□□□□□ -0.34
COL3A1-206ENST00000487010 TMEM150BA6NC51 233 aa12.95□□□□□ -0.34
COL3A1-206ENST00000487010 PRPF4O43172 522 aaKnown RBP eCLIP12.95□□□□□ -0.34
COL3A1-206ENST00000487010 PSTPIP1O43586 416 aa12.95□□□□□ -0.34
COL3A1-206ENST00000487010 FDX1P10109 184 aa12.95□□□□□ -0.34
COL3A1-206ENST00000487010 GNAZP19086 355 aa12.95□□□□□ -0.34
COL3A1-206ENST00000487010 CNGA1P29973 690 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms