RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 TNNC2P02585 160 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 THP07101 528 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 TPM2P07951 284 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 LRPAP1P30533 357 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 MRE11P49959 708 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 GUCY2FP51841 1108 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 FILIP1LQ4L180 1135 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 C9orf50Q5SZB4 431 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 SCARA3Q6AZY7 606 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 DPY19L2P1Q6NXN4 242 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 TMCO2Q7Z6W1 182 aaPredicted RBP10.34□□□□□ -0.75
MCF2L-227ENST00000486806 LRRC43Q8N309 656 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 BEST2Q8NFU1 509 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 LMO3Q8TAP4 145 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 PHOSPHO2Q8TCD6 241 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 URGCPQ8TCY9 931 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 ERGIC2Q96RQ1 377 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 SLC9A7Q96T83 725 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 MRPL9Q9BYD2 267 aaKnown RBP10.34□□□□□ -0.75
MCF2L-227ENST00000486806 MTIF3Q9H2K0 278 aaKnown RBP10.34□□□□□ -0.75
MCF2L-227ENST00000486806 MMRN2Q9H8L6 949 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 GOLGA2P5Q9HBQ8 144 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 SIK3Q9Y2K2 1263 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 TTC3P53804 2025 aa10.34□□□□□ -0.75
MCF2L-227ENST00000486806 A0A1W2PQC6 194 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 CBFA2T2O43439 604 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 UPP2O95045 317 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 STAU1O95793 577 aaKnown RBP10.33□□□□□ -0.76
MCF2L-227ENST00000486806 HLA-DRAP01903 254 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 ITGB3P05106 788 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 ZNF75DP51815 510 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 HTRA4P83105 476 aaPredicted RBP10.33□□□□□ -0.76
MCF2L-227ENST00000486806 UBXN1Q04323 297 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 KCNMA1Q12791 1236 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 TUSC3Q13454 348 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 BIRC3Q13489 604 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 NCOA4Q13772 614 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 FKBP15Q5T1M5 1219 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 C9orf57Q5W0N0 161 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 CMTR2Q8IYT2 770 aaKnown RBP10.33□□□□□ -0.76
MCF2L-227ENST00000486806 ABI1Q8IZP0 508 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 FBXL13Q8NEE6 735 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 CACTINQ8WUQ7 758 aaKnown RBP10.33□□□□□ -0.76
MCF2L-227ENST00000486806 SEMA4DQ92854 862 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 MRFAP1L1Q96HT8 127 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 XYLT2Q9H1B5 865 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 VRTNQ9H8Y1 702 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 RAB20Q9NX57 234 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 DPP3Q9NY33 737 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 GCNT4Q9P109 453 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 KANSL3Q9P2N6 904 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 HCSTQ9UBK5 93 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 SLC4A7Q9Y6M7 1214 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 PTPRSQ13332 1948 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 ITIH6Q6UXX5 1313 aa10.33□□□□□ -0.76
MCF2L-227ENST00000486806 PDCD11Q14690 1871 aaKnown RBP10.32□□□□□ -0.76
MCF2L-227ENST00000486806 TBKBP1A7MCY6 615 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 PES1O00541 588 aaKnown RBP10.32□□□□□ -0.76
MCF2L-227ENST00000486806 PIRO00625 290 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 PPEF2O14830 753 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 LRRN2O75325 713 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 DDHD2O94830 711 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 ASS1P00966 412 aaKnown RBP10.32□□□□□ -0.76
MCF2L-227ENST00000486806 CST3P01034 146 aaPredicted RBP10.32□□□□□ -0.76
MCF2L-227ENST00000486806 TPM3P06753 285 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 ATP2A2P16615 1042 aaKnown RBP10.32□□□□□ -0.76
MCF2L-227ENST00000486806 PON1P27169 355 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 POLR2BP30876 1174 aaKnown RBP10.32□□□□□ -0.76
MCF2L-227ENST00000486806 PIK3CAP42336 1068 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 PLCB2Q00722 1185 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 SYCP1Q15431 976 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 UPP1Q16831 310 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 EXOC3L4Q17RC7 722 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 TRIM65Q6PJ69 517 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 GBP6Q6ZN66 633 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 ZNF280BQ86YH2 543 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 HERC6Q8IVU3 1022 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 COLGALT2Q8IYK4 626 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 LRRC52Q8N7C0 313 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 SP7Q8TDD2 431 aaPredicted RBP10.32□□□□□ -0.76
MCF2L-227ENST00000486806 RNPC3Q96LT9 517 aaKnown RBP10.32□□□□□ -0.76
MCF2L-227ENST00000486806 UROC1Q96N76 676 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 PAAF1Q9BRP4 392 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 CRACR2AQ9BSW2 395 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 TRIM5Q9C035 493 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 INTS2Q9H0H0 1204 aaKnown RBP10.32□□□□□ -0.76
MCF2L-227ENST00000486806 SIX2Q9NPC8 291 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 CACNG4Q9UBN1 327 aa10.32□□□□□ -0.76
MCF2L-227ENST00000486806 CASTOR2A6NHX0 329 aa10.31□□□□□ -0.76
MCF2L-227ENST00000486806 TMEM189-UBE2V1I3L0A0 370 aa10.31□□□□□ -0.76
MCF2L-227ENST00000486806 TULP1O00294 542 aaPredicted RBP10.31□□□□□ -0.76
MCF2L-227ENST00000486806 PODXLO00592 558 aa10.31□□□□□ -0.76
MCF2L-227ENST00000486806 ZC3H11AO75152 810 aaKnown RBP eCLIP10.31□□□□□ -0.76
MCF2L-227ENST00000486806 LINC00271P0C7V0 271 aa10.31□□□□□ -0.76
MCF2L-227ENST00000486806 SLC9A1P19634 815 aa10.31□□□□□ -0.76
MCF2L-227ENST00000486806 ATICP31939 592 aa10.31□□□□□ -0.76
MCF2L-227ENST00000486806 RPL9P32969 192 aaKnown RBP10.31□□□□□ -0.76
MCF2L-227ENST00000486806 BMP8BP34820 402 aa10.31□□□□□ -0.76
MCF2L-227ENST00000486806 AARSP49588 968 aaKnown RBP eCLIP10.31□□□□□ -0.76
MCF2L-227ENST00000486806 KLK7P49862 253 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms