RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CD248Q9HCU0 757 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 FOXN3O00409 490 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 ATMINO43313 823 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 SLITRK3O94933 977 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 TFRCP02786 760 aaKnown RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 MUTP22033 750 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 NOP14P78316 857 aaKnown RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 KYAT1Q16773 422 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 TMEM119Q4V9L6 283 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 FKBP1CQ5VVH2 108 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 C1orf228Q6PIY5 440 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 RNF168Q8IYW5 571 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 SEC16BQ96JE7 1060 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 MROH8Q9H579 483 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 PARVAQ9NVD7 372 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 ERAP1Q9NZ08 941 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 PI4K2BG5E9Z4 385 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 ZBTB39O15060 712 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 EXTL3O43909 919 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 HBP1O60381 514 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 OPHN1O60890 802 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 CTSHP09668 335 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 FIGNQ5HY92 759 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 ATF7IP2Q5U623 682 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 C17orf75Q9HAS0 396 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 NAGPAQ9UK23 515 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 SNX9Q9Y5X1 595 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 VWA5AO00534 786 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 DPYSL4O14531 572 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 LMNAP02545 664 aaKnown RBP11.66□□□□□ -0.54
HDAC6-228ENST00000486227 KRT10P13645 584 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 LAMC2Q13753 1193 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 SGSM1Q2NKQ1 1148 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 SMC1BQ8NDV3 1235 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 CFAP61Q8NHU2 1237 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 GLIS2Q9BZE0 524 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-228ENST00000486227 CCDC68Q9H2F9 335 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 RBM12Q9NTZ6 932 aaKnown RBP11.66□□□□□ -0.54
HDAC6-228ENST00000486227 PCDHB2Q9Y5E7 798 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 GOLGA8MH3BSY2 632 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 PIK3R2O00459 728 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 STK25O00506 426 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 P4HA2O15460 535 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 SOX10P56693 466 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 SNRPFP62306 86 aaKnown RBP11.66□□□□□ -0.54
HDAC6-228ENST00000486227 PRPSAP1Q14558 356 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 ARL13BQ3SXY8 428 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 AGBL2Q5U5Z8 902 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 CYB5D1Q6P9G0 228 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 MYCBPAPQ8TBZ2 947 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 TUBB6Q9BUF5 446 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 KLHL11Q9NVR0 708 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 UVRAGQ9P2Y5 699 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 CACNA1FO60840 1977 aa11.66□□□□□ -0.54
HDAC6-228ENST00000486227 MANSC4A6NHS7 340 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-228ENST00000486227 MT-ND3P03897 115 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 KRT7P08729 469 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 WEE2P0C1S8 567 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 SUPT20HL2P0C7V6 817 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 CPT1AP50416 773 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 PGM5Q15124 567 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 IL17AQ16552 155 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 DGKDQ16760 1214 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 USP50Q70EL3 339 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-228ENST00000486227 SDCCAG8Q86SQ7 713 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-228ENST00000486227 TTC13Q8NBP0 860 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 TRAPPC3O43617 180 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 TMEM253P0C7T8 217 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 DSG3P32926 999 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 BYSLQ13895 437 aaKnown RBP11.65□□□□□ -0.54
HDAC6-228ENST00000486227 TTC39CQ8N584 583 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 FAF2Q96CS3 445 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 OPTNQ96CV9 577 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 PGBD4Q96DM1 585 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 SCYL1Q96KG9 808 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 ARHGAP20Q9P2F6 1191 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.65□□□□□ -0.54
HDAC6-228ENST00000486227 ALG6Q9Y672 507 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 TMEM150BA6NC51 233 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 FAM187AA6NFU0 413 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 MAPK13O15264 365 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 ASAP2O43150 1006 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 BAG2O95816 211 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 KRT3P12035 628 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 BRD2P25440 801 aaKnown RBP11.65□□□□□ -0.54
HDAC6-228ENST00000486227 RARRES1P49788 294 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 HP1BP3Q5SSJ5 553 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-228ENST00000486227 C4orf19Q8IY42 314 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 PPP4R1Q8TF05 950 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 HAS1Q92839 578 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 C18orf8Q96DM3 657 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 OLFML3Q9NRN5 406 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 EHD2Q9NZN4 543 aa11.65□□□□□ -0.54
HDAC6-228ENST00000486227 MEIS2O14770 477 aa11.65□□□□□ -0.55
HDAC6-228ENST00000486227 TTI1O43156 1089 aa11.65□□□□□ -0.55
HDAC6-228ENST00000486227 CARSP49589 748 aaKnown RBP11.65□□□□□ -0.55
HDAC6-228ENST00000486227 SHROOM1Q2M3G4 852 aaPredicted RBP11.65□□□□□ -0.55
HDAC6-228ENST00000486227 AFAP1L2Q8N4X5 818 aa11.65□□□□□ -0.55
HDAC6-228ENST00000486227 SAMD3Q8N6K7 520 aa11.65□□□□□ -0.55
HDAC6-228ENST00000486227 CFAP36Q96G28 342 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms