RNA–Protein interactions for RNA: ENST00000480057.1

VTI1A-204, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-204ENST00000480057 RPUSD2Q8IZ73 545 aaKnown RBP11.83□□□□□ -0.52
VTI1A-204ENST00000480057 UBR7Q8N806 425 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 KLHDC9Q8NEP7 349 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 CTNNBL1Q8WYA6 563 aaPredicted RBP11.83□□□□□ -0.52
VTI1A-204ENST00000480057 RFFLQ8WZ73 363 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 ZNF668Q96K58 619 aaPredicted RBP11.83□□□□□ -0.52
VTI1A-204ENST00000480057 RPGRIP1Q96KN7 1286 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 ACAP3Q96P50 834 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 CCDC94Q9BW85 323 aaPredicted RBP11.83□□□□□ -0.52
VTI1A-204ENST00000480057 MTMR12Q9C0I1 747 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 NIF3L1Q9GZT8 377 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 FAM49AQ9H0Q0 323 aaPredicted RBP11.83□□□□□ -0.52
VTI1A-204ENST00000480057 VRTNQ9H8Y1 702 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 RNF186Q9NXI6 227 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 HDAC6Q9UBN7 1215 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 GTF2IRD1Q9UHL9 959 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 SAR1BQ9Y6B6 198 aa11.83□□□□□ -0.52
VTI1A-204ENST00000480057 LACTBL1A8MY62 500 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 TREHO43280 583 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 TADA3O75528 432 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 CABYRO75952 493 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 SGPL1O95470 568 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 CXCL8P10145 99 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 CHRNB2P17787 502 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 HOXA11P31270 313 aaPredicted RBP11.82□□□□□ -0.52
VTI1A-204ENST00000480057 USP8P40818 1118 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 TFAMQ00059 246 aaKnown RBP11.82□□□□□ -0.52
VTI1A-204ENST00000480057 PTPN11Q06124 597 aaPredicted RBP11.82□□□□□ -0.52
VTI1A-204ENST00000480057 HIC1Q14526 733 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 SNX17Q15036 470 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 KIZQ2M2Z5 673 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 CATSPER4Q7RTX7 472 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 NOP9Q86U38 636 aaKnown RBP11.82□□□□□ -0.52
VTI1A-204ENST00000480057 RSPH3Q86UC2 560 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 RHOT2Q8IXI1 618 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 EFCAB13Q8IY85 973 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 SYCE1Q8N0S2 351 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 TTC39CQ8N584 583 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 PCSK9Q8NBP7 692 aaKnown RBP11.82□□□□□ -0.52
VTI1A-204ENST00000480057 DDX1Q92499 740 aaKnown RBP11.82□□□□□ -0.52
VTI1A-204ENST00000480057 CPB2Q96IY4 423 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 PI4K2AQ9BTU6 479 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 CARD6Q9BX69 1037 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 PACSIN1Q9BY11 444 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 APOBEC3GQ9HC16 384 aaKnown RBP11.82□□□□□ -0.52
VTI1A-204ENST00000480057 XPNPEP3Q9NQH7 507 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 SAGE1Q9NXZ1 904 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 RNF14Q9UBS8 474 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 SALL4Q9UJQ4 1053 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 ITGA11Q9UKX5 1188 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 SNX12Q9UMY4 172 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 HYOU1Q9Y4L1 999 aa11.82□□□□□ -0.52
VTI1A-204ENST00000480057 MYADML2A6NDP7 307 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 CES2O00748 559 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 MTA2O94776 668 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 CST3P01034 146 aaPredicted RBP11.81□□□□□ -0.52
VTI1A-204ENST00000480057 ATP1A1P05023 1023 aaKnown RBP11.81□□□□□ -0.52
VTI1A-204ENST00000480057 KRT5P13647 590 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 ZNF132P52740 706 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 NAP1L1P55209 391 aaKnown RBP11.81□□□□□ -0.52
VTI1A-204ENST00000480057 MYL6P60660 151 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 FMO1Q01740 532 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 ZNF699Q32M78 642 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 SLC10A6Q3KNW5 377 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 CCSAPQ6IQ19 270 aaPredicted RBP11.81□□□□□ -0.52
VTI1A-204ENST00000480057 SLFN11Q7Z7L1 901 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 SLC47A2Q86VL8 602 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 CEP120Q8N960 986 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 SLC20A1Q8WUM9 679 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 DNAJB3Q8WWF6 145 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 FAM212AQ96EL1 285 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 TRIM11Q96F44 468 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 PPP1R16BQ96T49 567 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 OSMRQ99650 979 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 CELF4Q9BZC1 486 aaKnown RBP11.81□□□□□ -0.52
VTI1A-204ENST00000480057 XYLT2Q9H1B5 865 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 NUB1Q9Y5A7 615 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.81□□□□□ -0.52
VTI1A-204ENST00000480057 TRPV2Q9Y5S1 764 aa11.81□□□□□ -0.52
VTI1A-204ENST00000480057 GRID2IPA4D2P6 1211 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 M0QZ92 97 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 TULP1O00294 542 aaPredicted RBP11.8□□□□□ -0.52
VTI1A-204ENST00000480057 BUB1O43683 1085 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 PALMO75781 387 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 NFICP08651 508 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 MYBL1P10243 752 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 P4HA1P13674 534 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 PRKAR2AP13861 404 aaKnown RBP11.8□□□□□ -0.52
VTI1A-204ENST00000480057 YARSP54577 528 aaKnown RBP11.8□□□□□ -0.52
VTI1A-204ENST00000480057 OSTNP61366 133 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 GPC5P78333 572 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 IRX5P78411 483 aaPredicted RBP11.8□□□□□ -0.52
VTI1A-204ENST00000480057 MRPS6P82932 125 aaKnown RBP11.8□□□□□ -0.52
VTI1A-204ENST00000480057 ITIH3Q06033 890 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 TMEM132DQ14C87 1099 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 NBPF20Q3BBV1 942 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 MEI1Q5TIA1 1274 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 JADE1Q6IE81 842 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 SPOPLQ6IQ16 392 aa11.8□□□□□ -0.52
VTI1A-204ENST00000480057 ACAD10Q6JQN1 1059 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms