RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 P2RX5Q93086 422 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 TMEM143Q96AN5 459 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 DHTKD1Q96HY7 919 aaPredicted RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 DUSP9Q99956 384 aaKnown RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 JPH2Q9BR39 696 aaPredicted RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 KATNAL1Q9BW62 490 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 TRAIPQ9BWF2 469 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 STRA6Q9BX79 667 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 ST6GALNAC4Q9H4F1 302 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 MRPL44Q9H9J2 332 aaKnown RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 C17orf75Q9HAS0 396 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 SPC25Q9HBM1 224 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 LARSQ9P2J5 1176 aaKnown RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 SALL4Q9UJQ4 1053 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 NFE2L3Q9Y4A8 694 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 BICDL2A1A5D9 508 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 MBLAC1A4D2B0 266 aaPredicted RBP7.3□□□□□ -1.24
USP48-208ENST00000479177 SMTNL1A8MU46 457 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 BECN2A8MW95 431 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 GOLGA6L19H0YKK7 550 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 SLC16A4O15374 487 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 MAGEB2O15479 319 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 ZEB2O60315 1214 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 PHACTR2O75167 634 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 PRPF6O94906 941 aaKnown RBP7.3□□□□□ -1.24
USP48-208ENST00000479177 KIF20AO95235 890 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 ZNF18P17022 549 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 HOXD13P35453 343 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 NAMPTP43490 491 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 NPTX2P47972 431 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 CLCN3P51790 818 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 PEX3P56589 373 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 IGBP1P78318 339 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 LRRC63Q05C16 580 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 KCNA1Q09470 495 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 DRP2Q13474 957 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 CAPSQ13938 189 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 ADGRE1Q14246 886 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 MBTPS1Q14703 1052 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 KIAA0753Q2KHM9 967 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 MARCH8Q5T0T0 291 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 L1TD1Q5T7N2 865 aaKnown RBP7.3□□□□□ -1.24
USP48-208ENST00000479177 CDKAL1Q5VV42 579 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 CEP135Q66GS9 1140 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 CENPPQ6IPU0 288 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 MTHFD1LQ6UB35 978 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 LRRC55Q6ZSA7 311 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 STXBP4Q6ZWJ1 553 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 ZNF720Q7Z2F6 126 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 CTU1Q7Z7A3 348 aaKnown RBP7.3□□□□□ -1.24
USP48-208ENST00000479177 NELFCDQ8IXH7 590 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 LRRC71Q8N4P6 559 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 IL22RA1Q8N6P7 574 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 SLC17A8Q8NDX2 589 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 TMEM161BQ8NDZ6 487 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 ZNF507Q8TCN5 953 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 LMBR1Q8WVP7 490 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 TCP11Q8WWU5 503 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 PSPC1Q8WXF1 523 aaKnown RBP7.3□□□□□ -1.24
USP48-208ENST00000479177 TTC9Q92623 222 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 HVCN1Q96D96 273 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 ZBTB10Q96DT7 871 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 IFT74Q96LB3 600 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 MTG1Q9BT17 334 aaPredicted RBP7.3□□□□□ -1.24
USP48-208ENST00000479177 KIFC3Q9BVG8 833 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 LACRTQ9GZZ8 138 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.3□□□□□ -1.24
USP48-208ENST00000479177 KCTD10Q9H3F6 313 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 LATS2Q9NRM7 1088 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 ARHGAP28Q9P2N2 729 aa7.3□□□□□ -1.24
USP48-208ENST00000479177 NRCAMQ92823 1304 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 RRN3P2A6NIE6 340 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 CCDC169A6NNP5 214 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 H0YCG3 227 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 AP5Z1O43299 807 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 HSPA1AP0DMV8 641 aaKnown RBP7.29□□□□□ -1.24
USP48-208ENST00000479177 HSPA1BP0DMV9 641 aaKnown RBP7.29□□□□□ -1.24
USP48-208ENST00000479177 SCP2P22307 547 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 KLRC1P26715 233 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 TPM4P67936 248 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 ADAM17P78536 824 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 GTF2BQ00403 316 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 PPP2R5AQ15172 486 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 KNOP1Q1ED39 458 aaKnown RBP7.29□□□□□ -1.24
USP48-208ENST00000479177 EDRF1Q3B7T1 1238 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 SLC9C1Q4G0N8 1177 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 ZC2HC1CQ53FD0 456 aaPredicted RBP7.29□□□□□ -1.24
USP48-208ENST00000479177 CDCA2Q69YH5 1023 aaPredicted RBP7.29□□□□□ -1.24
USP48-208ENST00000479177 ANKRD40Q6AI12 368 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 SARM1Q6SZW1 724 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 SHISA2Q6UWI4 295 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 CXCL17Q6UXB2 119 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 HAUS6Q7Z4H7 955 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 WFDC8Q8IUA0 241 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 MAP4K3Q8IVH8 894 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 KSR1Q8IVT5 923 aa7.29□□□□□ -1.24
USP48-208ENST00000479177 ZC3H3Q8IXZ2 948 aaKnown RBP7.29□□□□□ -1.24
USP48-208ENST00000479177 NOC3LQ8WTT2 800 aaKnown RBP7.29□□□□□ -1.24
USP48-208ENST00000479177 PRPF31Q8WWY3 499 aaKnown RBP7.29□□□□□ -1.24
USP48-208ENST00000479177 TSG101Q99816 390 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms