RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 OR6B3Q8NGW1 331 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 FNIP1Q8TF40 1166 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 CCT6BQ92526 530 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 FAM168AQ92567 244 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 MAML1Q92585 1016 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 C1orf43Q9BWL3 253 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 STK33Q9BYT3 514 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 C11orf54Q9H0W9 315 aaPredicted RBP6.22□□□□□ -1.41
UPF3B-203ENST00000478840 L2HGDHQ9H9P8 463 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 SMURF2Q9HAU4 748 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 SERHLQ9NQF3 203 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 PCDHGB3Q9Y5G1 929 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 PMF1-BGLAPU3KQ54 211 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 PRSS29PA6NIE9 313 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 FFAR2O15552 330 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 AHSGP02765 367 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 HARSP12081 509 aaKnown RBP6.21□□□□□ -1.42
UPF3B-203ENST00000478840 FGFR2P21802 821 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 CSF2RBP32927 897 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 PTPN7P35236 360 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 MAPK10P53779 464 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 HGFACQ04756 655 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 BIRC3Q13489 604 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 KIF22Q14807 665 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 PRR23BQ6ZRT6 265 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 TMEFF1Q8IYR6 380 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 GIMAP8Q8ND71 665 aaPredicted RBP6.21□□□□□ -1.42
UPF3B-203ENST00000478840 CDC5LQ99459 802 aaKnown RBP6.21□□□□□ -1.42
UPF3B-203ENST00000478840 P2RX7Q99572 595 aaKnown RBP6.21□□□□□ -1.42
UPF3B-203ENST00000478840 KRTAP4-8Q9BYQ9 185 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 MYLK2Q9H1R3 596 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 RLIMQ9NVW2 624 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 ADAM29Q9UKF5 820 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 LZTS1Q9Y250 596 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 RBM8AQ9Y5S9 174 aaKnown RBP6.21□□□□□ -1.42
UPF3B-203ENST00000478840 CARMIL2Q6F5E8 1435 aa6.21□□□□□ -1.42
UPF3B-203ENST00000478840 CLCA1A8K7I4 914 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 HMGB1P1B2RPK0 211 aaPredicted RBP6.2□□□□□ -1.42
UPF3B-203ENST00000478840 ABHD16AO95870 558 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 CSTBP04080 98 aaKnown RBP6.2□□□□□ -1.42
UPF3B-203ENST00000478840 HDCP19113 662 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 EEF1GP26641 437 aaKnown RBP6.2□□□□□ -1.42
UPF3B-203ENST00000478840 ALDH1A3P47895 512 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 USP10Q14694 798 aaKnown RBP6.2□□□□□ -1.42
UPF3B-203ENST00000478840 CCDC38Q502W7 563 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 C3orf38Q5JPI3 329 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 KLHDC7AQ5VTJ3 777 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 TMEM132EQ6IEE7 984 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 ZNF783Q6ZMS7 281 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 USP30Q70CQ3 517 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 FRMD5Q7Z6J6 570 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 MICU3Q86XE3 530 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 ZDHHC14Q8IZN3 488 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 ZNF527Q8NB42 609 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 STON2Q8WXE9 905 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 DIRC2Q96SL1 478 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 SGPP1Q9BX95 441 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 EIF2AQ9BY44 585 aaKnown RBP6.2□□□□□ -1.42
UPF3B-203ENST00000478840 KIAA1683Q9H0B3 1180 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 KCNH6Q9H252 994 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 SACM1LQ9NTJ5 587 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.2□□□□□ -1.42
UPF3B-203ENST00000478840 FAM30AQ9NZY2 134 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 PNMA2Q9UL42 364 aa6.2□□□□□ -1.42
UPF3B-203ENST00000478840 PMS2P1A4D2B8 440 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 GOLGA6L3A6NEY3 463 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 BTN3A1O00481 513 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 HNRNPDLO14979 420 aaKnown RBP6.19□□□□□ -1.42
UPF3B-203ENST00000478840 GRM6O15303 877 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 SLC43A1O75387 559 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 ANXA2P07355 339 aaKnown RBP6.19□□□□□ -1.42
UPF3B-203ENST00000478840 MTHFD1P11586 935 aaKnown RBP6.19□□□□□ -1.42
UPF3B-203ENST00000478840 PDIA3P30101 505 aaKnown RBP6.19□□□□□ -1.42
UPF3B-203ENST00000478840 ALDH9A1P49189 494 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 BPIFB4P59827 614 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 RPS16P62249 146 aaKnown RBP6.19□□□□□ -1.42
UPF3B-203ENST00000478840 DLG4P78352 724 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 EXOSC9Q06265 439 aaKnown RBP6.19□□□□□ -1.42
UPF3B-203ENST00000478840 NFYCQ13952 458 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 HABP2Q14520 560 aaPredicted RBP6.19□□□□□ -1.42
UPF3B-203ENST00000478840 STARD3Q14849 445 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 CCDC93Q567U6 631 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 ZMAT1Q5H9K5 638 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 ZFYVE27Q5T4F4 411 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 AFMIDQ63HM1 303 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 CCDC70Q6NSX1 233 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 CATSPERGQ6ZRH7 1159 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 BEND5Q7L4P6 421 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 PDSS2Q86YH6 399 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 CACNA2D3Q8IZS8 1091 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 KLHL36Q8N4N3 616 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 MYCT1Q8N699 235 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 FANCBQ8NB91 859 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 CYP2W1Q8TAV3 490 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 MDM1Q8TC05 714 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 IQCDQ96DY2 449 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 SNX22Q96L94 193 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 GDF15Q99988 308 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 ZNF518BQ9C0D4 1074 aa6.19□□□□□ -1.42
UPF3B-203ENST00000478840 SLC23A1Q9UHI7 598 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms