RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FOLR3P41439 243 aa4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 ID4P47928 161 aa4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 KRTAP10-6P60371 365 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 DALRD3Q5D0E6 543 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 VWA1Q6PCB0 445 aa4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 C16orf86Q6ZW13 317 aa4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 PEG10Q86TG7 708 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 PQLC1Q8N2U9 271 aa4.86□□□□□ -1.63
CCDC88A-212ENST00000474059 TP73O15350 636 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 PROM1O43490 865 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 RAB11FIP3O75154 756 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 CKBP12277 381 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 FCER1AP12319 257 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 CTGFP29279 349 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 ECHS1P30084 290 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 SF3A1Q15459 793 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 MUM1Q2TAK8 710 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 UBE3BQ7Z3V4 1068 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 C11orf74Q86VG3 221 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 HOMER1Q86YM7 354 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 ORAI2Q96SN7 254 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 FANCLQ9NW38 375 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 KCNG1Q9UIX4 513 aa4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 AJAP1Q9UKB5 411 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-212ENST00000474059 AMY1AP04745 511 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 SRGNP10124 158 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 IL2RBP14784 551 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 RGS19P49795 217 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 TFF2Q03403 129 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 SART3Q15020 963 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 CCDC144BQ3MJ40 725 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 ATP13A4Q4VNC1 1196 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 ZGPATQ8N5A5 531 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 OR2I1PQ8NGU4 316 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 REXO4Q9GZR2 422 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 CPNE5Q9HCH3 593 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 LANCL2Q9NS86 450 aa4.84□□□□□ -1.63
CCDC88A-212ENST00000474059 CDHR4A6H8M9 788 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 NEMP1O14524 444 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 KCNAB3O43448 404 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 PEX1O43933 1283 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 SLC6A4P31645 630 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 MRPS9P82933 396 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 ATP8B2P98198 1209 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 MTM1Q13496 603 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 AKNAD1Q5T1N1 836 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 C11orf87Q6NUJ2 197 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 PTF1AQ7RTS3 328 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 HASPINQ8TF76 798 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 CASKIN2Q8WXE0 1202 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 MFSD3Q96ES6 412 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 RAX2Q96IS3 184 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 ACAP3Q96P50 834 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 GREM2Q9H772 168 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 RBM12Q9NTZ6 932 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 MOCS1Q9NZB8 636 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 DMTF1Q9Y222 760 aa4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 MTO1Q9Y2Z2 717 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-212ENST00000474059 YY2O15391 372 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 TSHZ1Q6ZSZ6 1077 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 AMIGO2Q86SJ2 522 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 AHI1Q8N157 1196 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 PDPRQ8NCN5 879 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 TGFBRAP1Q8WUH2 860 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 NUP133Q8WUM0 1156 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 TFAP2BQ92481 460 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 LPIN2Q92539 896 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 HEPHQ9BQS7 1158 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 QRSL1Q9H0R6 528 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 IFT122Q9HBG6 1241 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 VTA1Q9NP79 307 aa4.82□□□□□ -1.64
CCDC88A-212ENST00000474059 TRGV11A0A075B6L2 103 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 A0A1W2PS29 197 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 VWC2LB2RUY7 222 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 ADM5C9JUS6 153 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 MPPED1O15442 326 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 GATA3P23771 443 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 GRIA3P42263 894 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 MCAMP43121 646 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 GRASPQ7Z6J2 395 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 COLGALT2Q8IYK4 626 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 DCBLD1Q8N8Z6 715 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 LEO1Q8WVC0 666 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 LMBR1Q8WVP7 490 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 AUTS2Q8WXX7 1259 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 WASF1Q92558 559 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 PNKPQ96T60 521 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 UHRF1Q96T88 793 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 TLR10Q9BXR5 811 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 SENP6Q9GZR1 1112 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 GSTO2Q9H4Y5 243 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 CTTNBP2NLQ9P2B4 639 aa4.81□□□□□ -1.64
CCDC88A-212ENST00000474059 TCRBV7S2A1N4TA0A589 114 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 WDR27A2RRH5 827 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 PRKCGP05129 697 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 GPD1P21695 349 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 TXNRD1Q16881 649 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 TSTD2Q5T7W7 516 aa4.8□□□□□ -1.64
CCDC88A-212ENST00000474059 FCRLBQ6BAA4 426 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms