RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 WNT7BP56706 349 aa20.6■□□□□ 0.89
PTCD3-210ENST00000473829 SMAD4Q13485 552 aaKnown RBP20.6■□□□□ 0.89
PTCD3-210ENST00000473829 KIAA1841Q6NSI8 718 aa20.6■□□□□ 0.89
PTCD3-210ENST00000473829 FEZF2Q8TBJ5 459 aa20.6■□□□□ 0.89
PTCD3-210ENST00000473829 FAM212AQ96EL1 285 aa20.6■□□□□ 0.89
PTCD3-210ENST00000473829 SAAL1Q96ER3 474 aa20.6■□□□□ 0.89
PTCD3-210ENST00000473829 APOL5Q9BWW9 433 aa20.6■□□□□ 0.89
PTCD3-210ENST00000473829 EMILIN2Q9BXX0 1053 aa20.6■□□□□ 0.89
PTCD3-210ENST00000473829 EIF3DO15371 548 aaKnown RBP eCLIP20.59■□□□□ 0.89
PTCD3-210ENST00000473829 NFICP08651 508 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 RPL17P18621 184 aaKnown RBP20.59■□□□□ 0.89
PTCD3-210ENST00000473829 KLRC2P26717 231 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 POSTNQ15063 836 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 PUS10Q3MIT2 529 aaKnown RBP20.59■□□□□ 0.89
PTCD3-210ENST00000473829 JADE1Q6IE81 842 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 CEP57Q86XR8 500 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 TMEM87AQ8NBN3 555 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 ZNF507Q8TCN5 953 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 SCFD1Q8WVM8 642 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 CASP10Q92851 521 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 DDX27Q96GQ7 796 aaKnown RBP20.59■□□□□ 0.89
PTCD3-210ENST00000473829 FAM213AQ9BRX8 229 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 TTPALQ9BTX7 342 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 TMEM206Q9H813 350 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 SLC39A2Q9NP94 309 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 CDH22Q9UJ99 828 aa20.59■□□□□ 0.89
PTCD3-210ENST00000473829 CIZ1Q9ULV3 898 aaPredicted RBP20.59■□□□□ 0.89
PTCD3-210ENST00000473829 SRGAP2BP0DMP2 458 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 GARTP22102 1010 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 FGFR3P22607 806 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 SMAD2Q15796 467 aaKnown RBP20.58■□□□□ 0.89
PTCD3-210ENST00000473829 KANK3Q6NY19 840 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 KRBA2Q6ZNG9 492 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 STXBP4Q6ZWJ1 553 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 GLYCTKQ8IVS8 523 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 PIK3R5Q8WYR1 880 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 S1PR5Q9H228 398 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 PCIF1Q9H4Z3 704 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 UBQLN1Q9UMX0 589 aaKnown RBP20.58■□□□□ 0.89
PTCD3-210ENST00000473829 SSX2IPQ9Y2D8 614 aa20.58■□□□□ 0.89
PTCD3-210ENST00000473829 USP15Q9Y4E8 981 aaPredicted RBP20.58■□□□□ 0.89
PTCD3-210ENST00000473829 GOLGA8IPA6NC78 632 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 GOLGA8JA6NMD2 632 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 PPEF2O14830 753 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 TGFB1I1O43294 461 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 ZNF202O95125 648 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 TKTP29401 623 aaKnown RBP20.57■□□□□ 0.88
PTCD3-210ENST00000473829 LRPAP1P30533 357 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 RPL9P32969 192 aaKnown RBP20.57■□□□□ 0.88
PTCD3-210ENST00000473829 ELAVL2Q12926 359 aaKnown RBP20.57■□□□□ 0.88
PTCD3-210ENST00000473829 KMT5BQ4FZB7 885 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 ARMCX5Q6P1M9 558 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.57■□□□□ 0.88
PTCD3-210ENST00000473829 NELFCDQ8IXH7 590 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 GPR65Q8IYL9 337 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 C12orf76Q8N812 135 aaPredicted RBP20.57■□□□□ 0.88
PTCD3-210ENST00000473829 KIAA0895Q8NCT3 520 aa20.57■□□□□ 0.88
PTCD3-210ENST00000473829 LNX1Q8TBB1 728 aaPredicted RBP20.57■□□□□ 0.88
PTCD3-210ENST00000473829 UBE4BO95155 1302 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 ADH1AP07327 375 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 CYP3A5P20815 502 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 ANP32AP39687 249 aaKnown RBP20.56■□□□□ 0.88
PTCD3-210ENST00000473829 STK4Q13043 487 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 TMEM132DQ14C87 1099 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 PSMD5Q16401 504 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 BMT2Q1RMZ1 405 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 SPATA1Q5VX52 437 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 PPFIBP1Q86W92 1011 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 CD302Q8IX05 232 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 EFCAB13Q8IY85 973 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 FMR1NBQ8N0W7 255 aaPredicted RBP20.56■□□□□ 0.88
PTCD3-210ENST00000473829 SUSD6Q92537 303 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 FBXL18Q96ME1 805 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 CD320Q9NPF0 282 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.56■□□□□ 0.88
PTCD3-210ENST00000473829 EXOC1Q9NV70 894 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 FNIP2Q9P278 1114 aa20.56■□□□□ 0.88
PTCD3-210ENST00000473829 MTCL1Q9Y4B5 1905 aaKnown RBP20.56■□□□□ 0.88
PTCD3-210ENST00000473829 TSC2P49815 1807 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 ADAM12O43184 909 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 DPYDQ12882 1025 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 BRSK2Q8IWQ3 736 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 FAM84AQ96KN4 292 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 CLSTN3Q9BQT9 956 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 ASB7Q9H672 318 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 AGPAT3Q9NRZ7 376 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 DZANK1Q9NVP4 752 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 DERAQ9Y315 318 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 C2orf16Q68DN1 1984 aa20.55■□□□□ 0.88
PTCD3-210ENST00000473829 SCN1AP35498 2009 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 NCOR1O75376 2440 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 EXTL3O43909 919 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 GLUD1P00367 558 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 RPN1P04843 607 aaKnown RBP20.54■□□□□ 0.88
PTCD3-210ENST00000473829 MYL1P05976 194 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 WEE2P0C1S8 567 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 SPATA31D3P0C874 917 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 HOXB8P17481 243 aaPredicted RBP20.54■□□□□ 0.88
PTCD3-210ENST00000473829 POU5F1Q01860 360 aaKnown RBP20.54■□□□□ 0.88
PTCD3-210ENST00000473829 ZP2Q05996 745 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms