RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 RIF1Q5UIP0 2472 aaKnown RBP14.82□□□□□ -0.04
CHD3-209ENST00000473376 STK25O00506 426 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 PODXLO00592 558 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 ZNF197O14709 1029 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 PTPN2P17706 415 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 TKTP29401 623 aaKnown RBP14.81□□□□□ -0.04
CHD3-209ENST00000473376 ELF1P32519 619 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 MCM2P49736 904 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 SOX4Q06945 474 aaPredicted RBP14.81□□□□□ -0.04
CHD3-209ENST00000473376 MCL1Q07820 350 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 NBR1Q14596 966 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 ZNF528Q3MIS6 628 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 GLRA4Q5JXX5 417 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 VARS2Q5ST30 1063 aaKnown RBP14.81□□□□□ -0.04
CHD3-209ENST00000473376 PARM1Q6UWI2 310 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 FRMD5Q7Z6J6 570 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 C3orf58Q8NDZ4 430 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 ZMAT2Q96NC0 199 aaKnown RBP14.81□□□□□ -0.04
CHD3-209ENST00000473376 RUSC1Q9BVN2 902 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 DNMT3BQ9UBC3 853 aaKnown RBP14.81□□□□□ -0.04
CHD3-209ENST00000473376 ODF2LQ9ULJ1 636 aa14.81□□□□□ -0.04
CHD3-209ENST00000473376 KANSL1LA0AUZ9 987 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 CCL16O15467 120 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 CLDN3O15551 220 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 BMP15O95972 392 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 MYBP10242 640 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 MAPTP10636 758 aaKnown RBP14.8□□□□□ -0.04
CHD3-209ENST00000473376 CYP3A5P20815 502 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 LRPAP1P30533 357 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 SLC12A3P55017 1021 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 GPC5P78333 572 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 ROR1Q01973 937 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 NOLC1Q14978 699 aaKnown RBP eCLIP14.8□□□□□ -0.04
CHD3-209ENST00000473376 C8orf34Q49A92 452 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 C1orf210Q8IVY1 113 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 NPAS3Q8IXF0 933 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 CEP120Q8N960 986 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 TRPV5Q9NQA5 729 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 CA14Q9ULX7 337 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 MRPS23Q9Y3D9 190 aaKnown RBP14.8□□□□□ -0.04
CHD3-209ENST00000473376 NUB1Q9Y5A7 615 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 FAM186AA6NE01 2351 aa14.8□□□□□ -0.04
CHD3-209ENST00000473376 OAZ2O95190 189 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 LMNAP02545 664 aaKnown RBP14.79□□□□□ -0.04
CHD3-209ENST00000473376 LRG1P02750 347 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 ADRB2P07550 413 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 RHOP08100 348 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 CLTAP09496 248 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 NTHL1P78549 312 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 POU5F1Q01860 360 aaKnown RBP14.79□□□□□ -0.04
CHD3-209ENST00000473376 MLF2Q15773 248 aaPredicted RBP14.79□□□□□ -0.04
CHD3-209ENST00000473376 SLC10A6Q3KNW5 377 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 SLC44A4Q53GD3 710 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 MAMSTRQ6ZN01 415 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 KCNK18Q7Z418 384 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 CD302Q8IX05 232 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 ITFG1Q8TB96 612 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 ELSPBP1Q96BH3 223 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 CFAP54Q96N23 3096 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 RPP25Q9BUL9 199 aaKnown RBP14.79□□□□□ -0.04
CHD3-209ENST00000473376 POLD4Q9HCU8 107 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 AFF4Q9UHB7 1163 aaKnown RBP14.79□□□□□ -0.04
CHD3-209ENST00000473376 FBXO4Q9UKT5 387 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 POLIQ9UNA4 740 aa14.79□□□□□ -0.04
CHD3-209ENST00000473376 VWA8A3KMH1 1905 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 WDR27A2RRH5 827 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 PP2D1A8MPX8 630 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 M0QZQ0 153 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 PRRG1O14668 218 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 SLC16A4O15374 487 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 NCAM2O15394 837 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 XPOTO43592 962 aaKnown RBP14.78□□□□□ -0.04
CHD3-209ENST00000473376 PIGRP01833 764 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 CDC25AP30304 524 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 BRCC3P46736 316 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 RPS9P46781 194 aaKnown RBP14.78□□□□□ -0.04
CHD3-209ENST00000473376 EPHA5P54756 1037 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 NCKAP1LP55160 1127 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 MLLT6P55198 1093 aaPredicted RBP14.78□□□□□ -0.04
CHD3-209ENST00000473376 ZBTB6Q15916 424 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 TMEM119Q4V9L6 283 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 ZNF280DQ6N043 979 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 ERMP1Q7Z2K6 904 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 BEST2Q8NFU1 509 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 DNASE1L2Q92874 299 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 CLDN23Q96B33 292 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 PNMA5Q96PV4 448 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 IER2Q9BTL4 223 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 BCO2Q9BYV7 579 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 GPR88Q9GZN0 384 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 GOLGA2P5Q9HBQ8 144 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 HSFX1Q9UBD0 423 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 FBXL5Q9UKA1 691 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 PCDHB8Q9UN66 801 aa14.78□□□□□ -0.04
CHD3-209ENST00000473376 MRPS17Q9Y2R5 130 aaKnown RBP14.78□□□□□ -0.04
CHD3-209ENST00000473376 TTC26A0AVF1 554 aa14.77□□□□□ -0.05
CHD3-209ENST00000473376 PLA2G4BP0C869 781 aa14.77□□□□□ -0.05
CHD3-209ENST00000473376 GLULP15104 373 aa14.77□□□□□ -0.05
CHD3-209ENST00000473376 IGFBP6P24592 240 aaPredicted RBP14.77□□□□□ -0.05
CHD3-209ENST00000473376 AARSP49588 968 aaKnown RBP eCLIP14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms