RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CYP7A1P22680 504 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 ALDH3B2P48448 385 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 SARNPP82979 210 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DNAJC3Q13217 504 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 CHADLQ6NUI6 762 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DSTYKQ6XUX3 929 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 NIPA1Q7RTP0 329 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 MARVELD2Q8N4S9 558 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 ANKRD13CQ8N6S4 541 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 SPDYE1Q8NFV5 336 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 EZH1Q92800 747 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 FRMD8Q9BZ67 464 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF385DQ9H6B1 395 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 LRRC4BQ9NT99 713 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 INTS9Q9NV88 658 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 NKX1-2Q9UD57 310 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 GPSM2P81274 684 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 MTA1Q13330 715 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 RNASEH2BQ5TBB1 312 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 KATNAL2Q8IYT4 538 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 MIGA1Q8NAN2 632 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 HELQQ8TDG4 1101 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 KLHL29Q96CT2 875 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 NSRP1Q9H0G5 558 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 EME2A4GXA9 379 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 TMEM221A6NGB7 291 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 BUB1O43683 1085 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 DIAPH2O60879 1101 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 L1CAMP32004 1257 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ECE1P42892 770 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ASIC1P78348 528 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 MYBPC3Q14896 1274 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF449Q6P9G9 518 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 GSTA5Q7RTV2 222 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 SULF1Q8IWU6 871 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 TNS4Q8IZW8 715 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 SUPT20HQ8NEM7 779 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 NINJ2Q9NZG7 142 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 IL1RAPL1Q9NZN1 696 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 HACD3Q9P035 362 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 COMMD10Q9Y6G5 202 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 SNNO75324 88 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ATG7O95352 703 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 FTCDO95954 541 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 STAT1P42224 750 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 SLC7A5Q01650 507 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 KPNB1Q14974 876 aaKnown RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 CYP4X1Q8N118 509 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 NIPA2Q8N8Q9 360 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 PROCA1Q8NCQ7 364 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 USP6NLQ92738 828 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ARHGEF26Q96DR7 871 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 TMEM120BA0PK00 339 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 PRDM1O75626 825 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 PSMD10O75832 226 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 STAMBPO95630 424 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 FGGP02679 453 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 CREB1P16220 341 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 NEK3P51956 506 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 FKBP1AP62942 108 aaKnown RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 GTF2BQ00403 316 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 MYLK4Q86YV6 388 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 SIAH1Q8IUQ4 282 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 CNBD1Q8NA66 436 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 RSPH1Q8WYR4 309 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 KRT35Q92764 455 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 OLFM3Q96PB7 478 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 IDI2Q9BXS1 227 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF696Q9H7X3 374 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 FGFR1OP2Q9NVK5 253 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF180Q9UJW8 692 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 POTECB2RU33 542 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 LYNP07948 512 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ADSLP30566 484 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 MAGEA3P43357 314 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 BCAMP50895 628 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 KLC1Q07866 573 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 WDR72Q3MJ13 1102 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 NIM1KQ8IY84 436 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 SPICE1Q8N0Z3 855 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 MS4A14Q96JA4 679 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 PCDHB18PQ96TA0 734 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ZBED2Q9BTP6 218 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 PLEKHA4Q9H4M7 779 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 JMJD4Q9H9V9 463 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 PDLIM7Q9NR12 457 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 THRAP3Q9Y2W1 955 aaKnown RBP5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ZHX2Q9Y6X8 837 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 CLUHO75153 1309 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC162PA2VCL2 907 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 SERPINB2P05120 415 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 AOC1P19801 751 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 SLC1A1P43005 524 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 MAGEA12P43365 314 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 FAAP100Q0VG06 881 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ACSBG2Q5FVE4 666 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 KRT79Q5XKE5 535 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 VPS36Q86VN1 386 aa5.69□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF677Q86XU0 584 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms