RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 TAS1R1Q7RTX1 841 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 GUF1Q8N442 669 aaKnown RBP16.59■□□□□ 0.25
SDC3-203ENST00000471567 ZSWIM2Q8NEG5 633 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 BEST2Q8NFU1 509 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 SMARCE1Q969G3 411 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 GBP4Q96PP9 640 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 KCTD10Q9H3F6 313 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 RBAKQ9NYW8 714 aaPredicted RBP16.59■□□□□ 0.25
SDC3-203ENST00000471567 THEGQ9P2T0 379 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 TUBGCP4Q9UGJ1 667 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 PCDHA5Q9Y5H7 936 aa16.59■□□□□ 0.25
SDC3-203ENST00000471567 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.58■□□□□ 0.24
SDC3-203ENST00000471567 GOLGA8IPA6NC78 632 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 GOLGA8JA6NMD2 632 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 CLIC2O15247 247 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 PAX3P23760 479 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 MYBPC2Q14324 1141 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 SURF1Q15526 300 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 KIAA1841Q6NSI8 718 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 RBM23Q86U06 439 aaKnown RBP16.58■□□□□ 0.24
SDC3-203ENST00000471567 SLC9A9Q8IVB4 645 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 XXYLT1Q8NBI6 393 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 HASPINQ8TF76 798 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 EMILIN2Q9BXX0 1053 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 IGFLR1Q9H665 355 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 UBE2ZQ9H832 354 aaPredicted RBP16.58■□□□□ 0.24
SDC3-203ENST00000471567 PRDM6Q9NQX0 595 aa16.58■□□□□ 0.24
SDC3-203ENST00000471567 PDCD11Q14690 1871 aaKnown RBP16.58■□□□□ 0.24
SDC3-203ENST00000471567 PER2O15055 1255 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 NFICP08651 508 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 CA8P35219 290 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 GTF2F1P35269 517 aaKnown RBP eCLIP16.57■□□□□ 0.24
SDC3-203ENST00000471567 AAK1Q2M2I8 961 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 COBLL1Q53SF7 1204 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 ZNF658Q5TYW1 1059 aaPredicted RBP16.57■□□□□ 0.24
SDC3-203ENST00000471567 FAM171A1Q5VUB5 890 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 PDXDC1Q6P996 788 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.57■□□□□ 0.24
SDC3-203ENST00000471567 C3orf58Q8NDZ4 430 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 NOC3LQ8WTT2 800 aaKnown RBP16.57■□□□□ 0.24
SDC3-203ENST00000471567 CACTINQ8WUQ7 758 aaKnown RBP16.57■□□□□ 0.24
SDC3-203ENST00000471567 ATXN2LQ8WWM7 1075 aaKnown RBP16.57■□□□□ 0.24
SDC3-203ENST00000471567 AUTS2Q8WXX7 1259 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 TTPALQ9BTX7 342 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 RXFP1Q9HBX9 757 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.57■□□□□ 0.24
SDC3-203ENST00000471567 DMAC2Q9NW81 257 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 CLDND1Q9NY35 253 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 TRAF3IP3Q9Y228 551 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 COL6A3P12111 3177 aa16.57■□□□□ 0.24
SDC3-203ENST00000471567 CALUO43852 315 aaPredicted RBP16.56■□□□□ 0.24
SDC3-203ENST00000471567 CLASP2O75122 1294 aaKnown RBP16.56■□□□□ 0.24
SDC3-203ENST00000471567 FGFR3P22607 806 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 IGFBP6P24592 240 aaPredicted RBP16.56■□□□□ 0.24
SDC3-203ENST00000471567 CYP2J2P51589 502 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 CREMQ03060 361 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 KCNC3Q14003 757 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 SNRNP35Q16560 246 aaKnown RBP16.56■□□□□ 0.24
SDC3-203ENST00000471567 NFIL3Q16649 462 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 TMEM184AQ6ZMB5 413 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 PPFIBP1Q86W92 1011 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 CBWD2Q8IUF1 395 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.56■□□□□ 0.24
SDC3-203ENST00000471567 EFCAB13Q8IY85 973 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 PIK3R5Q8WYR1 880 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 KLHL5Q96PQ7 755 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 FNIP2Q9P278 1114 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 NUB1Q9Y5A7 615 aa16.56■□□□□ 0.24
SDC3-203ENST00000471567 ANO9A1A5B4 782 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 C2CD2LO14523 706 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 EXOC3O60645 756 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 C1RP00736 705 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 CNPP09543 421 aaKnown RBP16.55■□□□□ 0.24
SDC3-203ENST00000471567 SRGAP2BP0DMP2 458 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 LTBRP36941 435 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 BRCC3P46736 316 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 WNT7BP56706 349 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 MRPS5P82675 430 aaKnown RBP16.55■□□□□ 0.24
SDC3-203ENST00000471567 C9orf57Q5W0N0 161 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 RIN2Q8WYP3 895 aaPredicted RBP16.55■□□□□ 0.24
SDC3-203ENST00000471567 ERCC4Q92889 916 aaPredicted RBP16.55■□□□□ 0.24
SDC3-203ENST00000471567 SUSD3Q96L08 255 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 PDE11AQ9HCR9 933 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 LMBRD1Q9NUN5 540 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 DPP3Q9NY33 737 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 MAPK8IP1Q9UQF2 711 aa16.55■□□□□ 0.24
SDC3-203ENST00000471567 ANK1P16157 1881 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 GOLGA6L22H0YM25 854 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 PIRO00625 290 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 SYN3O14994 580 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 LINC01565O15544 149 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 NR3C1P04150 777 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 ADH1AP07327 375 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 KLRC2P26717 231 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 MCM4P33991 863 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 PPP1R2P41236 205 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 AARSP49588 968 aaKnown RBP eCLIP16.54■□□□□ 0.24
SDC3-203ENST00000471567 GUCY2FP51841 1108 aa16.54■□□□□ 0.24
SDC3-203ENST00000471567 TFAMQ00059 246 aaKnown RBP16.54■□□□□ 0.24
SDC3-203ENST00000471567 PSMD6Q15008 389 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms