RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 JADE1Q6IE81 842 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 PDXDC1Q6P996 788 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 KLHL23Q8NBE8 558 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 ENOX1Q8TC92 643 aaKnown RBP13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 CCDC127Q96BQ5 260 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 BORCS6Q96GS4 357 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 CGRRF1Q99675 332 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 DUSP9Q99956 384 aaKnown RBP13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 BPIFA3Q9BQP9 254 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 C17orf80Q9BSJ5 609 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 NGRNQ9NPE2 291 aaKnown RBP13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 DPP3Q9NY33 737 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 DNAJB4Q9UDY4 337 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 CTNND2Q9UQB3 1225 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 SF3B1O75533 1304 aaKnown RBP eCLIP13.65□□□□□ -0.226e-7■■■■■ 71.8
SPTLC1-204ENST00000469778 ANO9A1A5B4 782 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 FSD2A1L4K1 749 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 PIRO00625 290 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 NFICP08651 508 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 TMEM191BP0C7N4 346 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 DLATP10515 647 aaKnown RBP13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 FXR1P51114 621 aaKnown RBP eCLIP13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 PMS1P54277 932 aaKnown RBP13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 TYRO3Q06418 890 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 BFSP1Q12934 665 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 TPD52L1Q16890 204 aaPredicted RBP13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 LRRC52Q8N7C0 313 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 ARNTL2Q8WYA1 636 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 ANP32EQ9BTT0 268 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 THAP9Q9H5L6 903 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 ADAM28Q9UKQ2 775 aa13.65□□□□□ -0.22
SPTLC1-204ENST00000469778 CITO14578 2027 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 PODXLO00592 558 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 PMM2O15305 246 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 EFEMP2O95967 443 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 C1RP00736 705 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 FAM163BP0C2L3 166 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 ATICP31939 592 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 CASP4P49662 377 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 CLCNKBP51801 687 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 CREMQ03060 361 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 MYO1EQ12965 1108 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 C9orf57Q5W0N0 161 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 TRAPPC11Q7Z392 1133 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 ZSWIM2Q8NEG5 633 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 SPPL3Q8TCT6 385 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 TAF4BQ92750 862 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 PPP2R3CQ969Q6 453 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 C18orf25Q96B23 403 aaPredicted RBP13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 LRCH3Q96II8 777 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 FAXDC2Q96IV6 333 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 ZNF560Q96MR9 790 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 SRRTQ9BXP5 876 aaKnown RBP13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 OXCT2Q9BYC2 517 aaPredicted RBP13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 CXCL16Q9H2A7 254 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 TTYH1Q9H313 450 aaPredicted RBP13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 NUB1Q9Y5A7 615 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 IRAK3Q9Y616 596 aa13.64□□□□□ -0.23
SPTLC1-204ENST00000469778 LAMA2P24043 3122 aaKnown RBP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 TRIM49BA6NDI0 452 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 CASTOR2A6NHX0 329 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 SMTNL1A8MU46 457 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 SYN3O14994 580 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 N4BP1O75113 896 aaKnown RBP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 ARHGEF15O94989 841 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 STAU1O95793 577 aaKnown RBP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 ITGB1P05556 798 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 AARSP49588 968 aaKnown RBP eCLIP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 STX17P56962 302 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 LILRA4P59901 499 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 SOX4Q06945 474 aaPredicted RBP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 CETN1Q12798 172 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 USP41Q3LFD5 358 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 ZSCAN23Q3MJ62 389 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 ZACNQ401N2 412 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 CCDC40Q4G0X9 1142 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 EFCAB13Q8IY85 973 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 RNF168Q8IYW5 571 aaPredicted RBP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 APPL2Q8NEU8 664 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 MRPL38Q96DV4 380 aaKnown RBP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 MAGEC2Q9UBF1 373 aaPredicted RBP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 TUBGCP4Q9UGJ1 667 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 DSEQ9UL01 958 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 MTUS1Q9ULD2 1270 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 PRG3Q9Y2Y8 225 aaPredicted RBP13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 RALGAPA2Q2PPJ7 1873 aa13.63□□□□□ -0.23
SPTLC1-204ENST00000469778 P4HA2O15460 535 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 NCK2O43639 380 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 B4GALT3O60512 393 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 LPXNO60711 386 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 PHACTR2O75167 634 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 C4BPAP04003 597 aaKnown RBP13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 SOD2P04179 222 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 CTSAP10619 480 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 EEF1GP26641 437 aaKnown RBP13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 TAF6P49848 677 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 SPAG1Q07617 926 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 TRPC3Q13507 836 aa13.62□□□□□ -0.23
SPTLC1-204ENST00000469778 GRIN2CQ14957 1233 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms