RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 MOXD2PA6NHM9 499 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 MIF4GDA9UHW6 222 aaKnown RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 E9PMD0 336 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 ZBED4O75132 1171 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 PHF2O75151 1096 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 UBOX5O94941 541 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 GJB6O95452 261 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 PLTPP55058 493 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 COPS2P61201 443 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 NKX3-2P78367 333 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 PPARDQ03181 441 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 AUHQ13825 339 aaKnown RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 ASPRV1Q53RT3 343 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 FAM133BQ5BKY9 247 aaKnown RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 C9orf50Q5SZB4 431 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 SAMD1Q6SPF0 538 aaPredicted RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 CHST13Q8NET6 341 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 LNX1Q8TBB1 728 aaPredicted RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 FBXO25Q8TCJ0 367 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 THOC1Q96FV9 657 aaKnown RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 SYT11Q9BT88 431 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 TRIM31Q9BZY9 425 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 UPF3AQ9H1J1 476 aaKnown RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 VAT1LQ9HCJ6 419 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 ABCF3Q9NUQ8 709 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 TBC1D7Q9P0N9 293 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 KIAA1024Q9UPX6 916 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 MTMR7Q9Y216 660 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 RIPK3Q9Y572 518 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 TLDC2A0PJX2 215 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 RASGRF2O14827 1237 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 DUSP11O75319 330 aaKnown RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 TTLL1O95922 423 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 PGK1P00558 417 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 ALAS1P13196 640 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 ALDH5A1P51649 535 aaPredicted RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 SLC12A3P55017 1021 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 KCNJ2P63252 427 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 ARSHQ5FYA8 562 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 ASRGL1Q7L266 308 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 CTNNBL1Q8WYA6 563 aaPredicted RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 SLC35C1Q96A29 364 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 CEP95Q96GE4 821 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 FGD4Q96M96 766 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 STK33Q9BYT3 514 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 ECT2Q9H8V3 914 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 TYW1Q9NV66 732 aaKnown RBP10.25□□□□□ -0.77
HDAC3-205ENST00000469550 SNX24Q9Y343 169 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 L3MBTL1Q9Y468 752 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 PCDHA3Q9Y5H8 950 aa10.25□□□□□ -0.77
HDAC3-205ENST00000469550 RIPK2O43353 540 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 PLA2G6O60733 806 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 SMNDC1O75940 238 aaKnown RBP eCLIP10.24□□□□□ -0.77
HDAC3-205ENST00000469550 AKAP3O75969 853 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 LUC7L3O95232 432 aaKnown RBP10.24□□□□□ -0.77
HDAC3-205ENST00000469550 SNHG28P0DPA3 235 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 CTNNA2P26232 953 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 ATP5DP30049 168 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 SOX5P35711 763 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 ACLYP53396 1101 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 PTPROQ16827 1216 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 ZNF568Q3ZCX4 644 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 TRMT10CQ7L0Y3 403 aaKnown RBP10.24□□□□□ -0.77
HDAC3-205ENST00000469550 CYFIP1Q7L576 1253 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 GLG1Q92896 1179 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 KLHL29Q96CT2 875 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 ZNF570Q96NI8 536 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 SEMA4AQ9H3S1 761 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 ERVK-5Q9HDB9 667 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 OSGEPQ9NPF4 335 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 ARL2BPQ9Y2Y0 163 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 STK24Q9Y6E0 443 aa10.24□□□□□ -0.77
HDAC3-205ENST00000469550 PNMA6FA0A0J9YX94 578 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 ANKRD62A6NC57 917 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 MARCH6O60337 910 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 KRT18P05783 430 aaKnown RBP10.23□□□□□ -0.77
HDAC3-205ENST00000469550 ITGB8P26012 769 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 CCDC15Q0P6D6 951 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 BLMHQ13867 455 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 GIT2Q14161 759 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 NFIL3Q16649 462 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 CYP1B1Q16678 543 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 CAPRIN2Q6IMN6 1127 aaKnown RBP10.23□□□□□ -0.77
HDAC3-205ENST00000469550 C11orf63Q6NUN7 778 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 EXOC3L1Q86VI1 746 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 DNAAF5Q86Y56 855 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 RHOT2Q8IXI1 618 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 TEX9Q8N6V9 391 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 MORC4Q8TE76 937 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 ART4Q93070 314 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 SPDL1Q96EA4 605 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 BORCS6Q96GS4 357 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 GMCL1Q96IK5 515 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 SERPINB12Q96P63 405 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 UBA5Q9GZZ9 404 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 KATNBL1Q9H079 304 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 GLT8D2Q9H1C3 349 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 ABHD16BQ9H3Z7 469 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 RXFP1Q9HBX9 757 aa10.23□□□□□ -0.77
HDAC3-205ENST00000469550 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms