RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 MAML3Q96JK9 1138 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 RUNDC3BQ96NL0 473 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 TINF2Q9BSI4 451 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 C16orf70Q9BSU1 422 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 IMPG2Q9BZV3 1241 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 ZNF518BQ9C0D4 1074 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 RNPEPQ9H4A4 650 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 ASB7Q9H672 318 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 SUGCTQ9HAC7 445 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 OSGEPQ9NPF4 335 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 PDGFCQ9NRA1 345 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 CTTNBP2NLQ9P2B4 639 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 DMGDHQ9UI17 866 aaKnown RBP8.16□□□□□ -1.1
COL6A3-208ENST00000468792 COG5Q9UP83 839 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 TRPC6Q9Y210 931 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 Q9Y3F1 56 aa8.16□□□□□ -1.1
COL6A3-208ENST00000468792 MCM3APO60318 1980 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 ZSWIM8A7E2V4 1837 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 PTPRJQ12913 1337 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 A6NJR5 290 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 H3BRB1 525 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 CEP104O60308 925 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 ZEB2O60315 1214 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 IGHA2P01877 340 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 SRGAP2CP0DJJ0 459 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 INSRRP14616 1297 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 ABCB4P21439 1286 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 ATICP31939 592 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 CDH5P33151 784 aaPredicted RBP8.15□□□□□ -1.1
COL6A3-208ENST00000468792 CTNNA1P35221 906 aaKnown RBP8.15□□□□□ -1.1
COL6A3-208ENST00000468792 USP8P40818 1118 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 PEX5P50542 639 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 DRG2P55039 364 aaKnown RBP8.15□□□□□ -1.1
COL6A3-208ENST00000468792 WNT7BP56706 349 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 INHBEP58166 350 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 NOP14P78316 857 aaKnown RBP8.15□□□□□ -1.1
COL6A3-208ENST00000468792 CBX1P83916 185 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 BIRC3Q13489 604 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 ACVR2BQ13705 512 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 AMHR2Q16671 573 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 DGKDQ16760 1214 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 MORN1Q5T089 497 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 WDR78Q5VTH9 848 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 ALS2CLQ60I27 953 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 DPP9Q86TI2 863 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 TRIM50Q86XT4 487 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 RHPN2Q8IUC4 686 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 MCOLN2Q8IZK6 566 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 TTC39CQ8N584 583 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 C1orf131Q8NDD1 294 aaKnown RBP8.15□□□□□ -1.1
COL6A3-208ENST00000468792 OR5B17Q8NGF7 314 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 CCDC26Q8TAB7 109 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 WHAMMQ8TF30 809 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 COPS5Q92905 334 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 TSPAN18Q96SJ8 248 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 PTPN18Q99952 460 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 ZSWIM1Q9BR11 485 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 TCHPQ9BT92 498 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 PLVAPQ9BX97 442 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 FAM129AQ9BZQ8 928 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 TUT1Q9H6E5 874 aaKnown RBP8.15□□□□□ -1.1
COL6A3-208ENST00000468792 IFT122Q9HBG6 1241 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 APOBEC3GQ9HC16 384 aaKnown RBP8.15□□□□□ -1.1
COL6A3-208ENST00000468792 MRPL47Q9HD33 250 aaKnown RBP8.15□□□□□ -1.1
COL6A3-208ENST00000468792 SEPT11Q9NVA2 429 aaKnown RBP8.15□□□□□ -1.1
COL6A3-208ENST00000468792 ANKFY1Q9P2R3 1169 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 PCDHA3Q9Y5H8 950 aa8.15□□□□□ -1.1
COL6A3-208ENST00000468792 GOLGA6L10A0A0M3HER8 536 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 FAM187AA6NFU0 413 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 MANSC4A6NHS7 340 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 TMCO5BA8MYB1 307 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 SART1O43290 800 aaKnown RBP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 PHACTR2O75167 634 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 KRT5P13647 590 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 EIF4BP23588 611 aaKnown RBP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 MARK3P27448 753 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 GBP1P32455 592 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 MAN1A1P33908 653 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 MATR3P43243 847 aaKnown RBP eCLIP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 PAK2Q13177 524 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 DHX34Q14147 1143 aaKnown RBP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 CYP1B1Q16678 543 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 SPDYCQ5MJ68 293 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 ZBTB41Q5SVQ8 909 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 OLFML2BQ68BL8 750 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 MTHFD1LQ6UB35 978 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 MON1BQ7L1V2 547 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 APBB1IPQ7Z5R6 666 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 LRRC71Q8N4P6 559 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 ZNF564Q8TBZ8 553 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-208ENST00000468792 FAM71BQ8TC56 605 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 HDAC7Q8WUI4 952 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 AFG1LQ8WV93 481 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 USP6NLQ92738 828 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 ANKRD36BP1Q96IX9 119 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 PSMB7Q99436 277 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 PI4K2AQ9BTU6 479 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 NUP85Q9BW27 656 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 NIF3L1Q9GZT8 377 aa8.14□□□□□ -1.11
COL6A3-208ENST00000468792 XYLT2Q9H1B5 865 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms