RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 TRMT13Q9NUP7 481 aaKnown RBP8.9□□□□□ -0.98
BRCA1-208ENST00000468300 NOCTQ9UK39 431 aaKnown RBP8.9□□□□□ -0.98
BRCA1-208ENST00000468300 PTPN22Q9Y2R2 807 aa8.9□□□□□ -0.98
BRCA1-208ENST00000468300 ZSCAN12O43309 604 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 ZC3H11AO75152 810 aaKnown RBP eCLIP8.9□□□□□ -0.99
BRCA1-208ENST00000468300 GNAT1P11488 350 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 TNNT1P13805 278 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 CHRNB2P17787 502 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 GRM5P41594 1212 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 PRMT2P55345 433 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 MRPS6P82932 125 aaKnown RBP8.9□□□□□ -0.99
BRCA1-208ENST00000468300 ITGA7Q13683 1181 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 PCBP1Q15365 356 aaKnown RBP eCLIP8.9□□□□□ -0.99
BRCA1-208ENST00000468300 SLC18A3Q16572 532 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 ARHGAP44Q17R89 818 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 SLC9C1Q4G0N8 1177 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 JADE1Q6IE81 842 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 TAF2Q6P1X5 1199 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 TRAPPC11Q7Z392 1133 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 C1orf127Q8N9H9 656 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 DDX1Q92499 740 aaKnown RBP8.9□□□□□ -0.99
BRCA1-208ENST00000468300 CCDC42Q96M95 316 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 FNBP1Q96RU3 617 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 LZTFL1Q9NQ48 299 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 PAK6Q9NQU5 681 aaPredicted RBP8.9□□□□□ -0.99
BRCA1-208ENST00000468300 ZNHIT6Q9NWK9 470 aaKnown RBP8.9□□□□□ -0.99
BRCA1-208ENST00000468300 GINS2Q9Y248 185 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 TRIM17Q9Y577 477 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 CEP83Q9Y592 693 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 PCDHA13Q9Y5I0 950 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 CDY2AQ9Y6F7 541 aa8.9□□□□□ -0.99
BRCA1-208ENST00000468300 NPTXRO95502 500 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 CALCAP01258 141 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 CLTAP09496 248 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 STAT1P42224 750 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 MNX1P50219 401 aaPredicted RBP8.89□□□□□ -0.99
BRCA1-208ENST00000468300 GCNT1Q02742 428 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 KLHL30Q0D2K2 578 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 PTPN14Q15678 1187 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 ZBTB6Q15916 424 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 SMG8Q8ND04 991 aaKnown RBP8.89□□□□□ -0.99
BRCA1-208ENST00000468300 SLC20A1Q8WUM9 679 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 SPAG5Q96R06 1193 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 PACSIN1Q9BY11 444 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 UNC93B1Q9H1C4 597 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 SPC25Q9HBM1 224 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 ADAMTS1Q9UHI8 967 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 CNTN6Q9UQ52 1028 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 HES2Q9Y543 173 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 MROH7Q68CQ1 1323 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 A0A1W2PQ45 241 aaPredicted RBP8.89□□□□□ -0.99
BRCA1-208ENST00000468300 A0A1W2PQY0 241 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 PJA2O43164 708 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 ERLIN2O94905 339 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 SGPL1O95470 568 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 ASS1P00966 412 aaKnown RBP8.89□□□□□ -0.99
BRCA1-208ENST00000468300 XKR4Q5GH76 650 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 SLC27A1Q6PCB7 646 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 TTC30BQ8N4P2 665 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 PCSK9Q8NBP7 692 aaKnown RBP8.89□□□□□ -0.99
BRCA1-208ENST00000468300 ARRDC4Q8NCT1 418 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 TSEN34Q9BSV6 310 aaKnown RBP8.89□□□□□ -0.99
BRCA1-208ENST00000468300 RNF39Q9H2S5 420 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 KDM4CQ9H3R0 1056 aa8.89□□□□□ -0.99
BRCA1-208ENST00000468300 NXF3Q9H4D5 531 aaKnown RBP8.89□□□□□ -0.99
BRCA1-208ENST00000468300 AGO3Q9H9G7 860 aaKnown RBP8.89□□□□□ -0.99
BRCA1-208ENST00000468300 CYLC1P35663 651 aaPredicted RBP8.88□□□□□ -0.99
BRCA1-208ENST00000468300 VAV2P52735 878 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 MYL6P60660 151 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 ETF1P62495 437 aaKnown RBP8.88□□□□□ -0.99
BRCA1-208ENST00000468300 NCOA4Q13772 614 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 SETDB1Q15047 1291 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 MTFR1Q15390 333 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 PTGISQ16647 500 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 TSR1Q2NL82 804 aaKnown RBP8.88□□□□□ -0.99
BRCA1-208ENST00000468300 FAM26DQ5JW98 314 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 USP37Q86T82 979 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 NOP9Q86U38 636 aaKnown RBP8.88□□□□□ -0.99
BRCA1-208ENST00000468300 SLC47A2Q86VL8 602 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 SNX27Q96L92 541 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 PCDHB18PQ96TA0 734 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 HMX1Q9NP08 348 aaPredicted RBP8.88□□□□□ -0.99
BRCA1-208ENST00000468300 NAGPAQ9UK23 515 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 PHF24Q9UPV7 400 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 SCN1AP35498 2009 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 MOXD2PA6NHM9 499 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 IL18RAPO95256 599 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 FERP16591 822 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 HSPA6P17066 643 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 PIK3CAP42336 1068 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 ASPAP45381 313 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 CETN1Q12798 172 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 SYT10Q6XYQ8 523 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 CATSPER4Q7RTX7 472 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 RNF180Q86T96 592 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 PPM1KQ8N3J5 372 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 EPS8L1Q8TE68 723 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 PMM1Q92871 262 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 NT5C1BQ96P26 610 aa8.88□□□□□ -0.99
BRCA1-208ENST00000468300 CCDC94Q9BW85 323 aaPredicted RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms