RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 SLC44A3Q8N4M1 653 aa13.07□□□□□ -0.32
PTPRF-211ENST00000467464 CALML4Q96GE6 196 aa13.07□□□□□ -0.32
PTPRF-211ENST00000467464 EPSTI1Q96J88 318 aa13.07□□□□□ -0.32
PTPRF-211ENST00000467464 SUSD3Q96L08 255 aa13.07□□□□□ -0.32
PTPRF-211ENST00000467464 PRRX2Q99811 253 aa13.07□□□□□ -0.32
PTPRF-211ENST00000467464 HCFC1R1Q9NWW0 138 aa13.07□□□□□ -0.32
PTPRF-211ENST00000467464 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.07□□□□□ -0.32
PTPRF-211ENST00000467464 KCNG1Q9UIX4 513 aa13.07□□□□□ -0.32
PTPRF-211ENST00000467464 TBX20Q9UMR3 447 aa13.07□□□□□ -0.32
PTPRF-211ENST00000467464 MORC2Q9Y6X9 1032 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-211ENST00000467464 VWA8A3KMH1 1905 aa13.07□□□□□ -0.32
PTPRF-211ENST00000467464 WDR27A2RRH5 827 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 KRBA1A5PL33 1030 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 SYN3O14994 580 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 GALR2O43603 387 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-211ENST00000467464 TRAPPC3O43617 180 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 ABLIM3O94929 683 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 CLTAP09496 248 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 FSHRP23945 695 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 LRPAP1P30533 357 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 AARSP49588 968 aaKnown RBP eCLIP13.06□□□□□ -0.32
PTPRF-211ENST00000467464 NUBP1P53384 320 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 GTF2BQ00403 316 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 ROR1Q01973 937 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 DHX8Q14562 1220 aaKnown RBP13.06□□□□□ -0.32
PTPRF-211ENST00000467464 ENOX2Q16206 610 aaKnown RBP13.06□□□□□ -0.32
PTPRF-211ENST00000467464 UVSSAQ2YD98 709 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 SPECC1Q5M775 1068 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 PPM1LQ5SGD2 360 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 ASTLQ6HA08 431 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-211ENST00000467464 MAP4K3Q8IVH8 894 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 ITFG1Q8TB96 612 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 LARP4BQ92615 738 aaKnown RBP13.06□□□□□ -0.32
PTPRF-211ENST00000467464 NXPE3Q969Y0 559 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 PLEKHA5Q9HAU0 1116 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 PIDD1Q9HB75 910 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 PARVGQ9HBI0 331 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 DNMT3BQ9UBC3 853 aaKnown RBP13.06□□□□□ -0.32
PTPRF-211ENST00000467464 MTMR6Q9Y217 621 aa13.06□□□□□ -0.32
PTPRF-211ENST00000467464 USP34Q70CQ2 3546 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 MYO15AQ9UKN7 3530 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 A0A0B4J269 797 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 ARHGEF37A1IGU5 675 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 TISP43B9A030 160 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 H0YCG3 227 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 K7ENM7 598 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 PI15O43692 258 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 TRAK2O60296 914 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 FAM13AO94988 1023 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 PDCP20941 246 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 SCP2P22307 547 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 MARCKSP29966 332 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-211ENST00000467464 NMT1P30419 496 aaKnown RBP13.05□□□□□ -0.32
PTPRF-211ENST00000467464 CLCN5P51795 746 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 SPAG1Q07617 926 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 MYCT1Q8N699 235 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 ST13P5Q8NFI4 369 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-211ENST00000467464 FGF14Q92915 247 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 INTS4Q96HW7 963 aaKnown RBP13.05□□□□□ -0.32
PTPRF-211ENST00000467464 CLIC6Q96NY7 704 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 RPP25Q9BUL9 199 aaKnown RBP13.05□□□□□ -0.32
PTPRF-211ENST00000467464 STRA6Q9BX79 667 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 IKZF4Q9H2S9 585 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 ST6GALNAC4Q9H4F1 302 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 FBXL5Q9UKA1 691 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 CDH7Q9ULB5 785 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 SRPRBQ9Y5M8 271 aaKnown RBP13.05□□□□□ -0.32
PTPRF-211ENST00000467464 NUMBLQ9Y6R0 609 aa13.05□□□□□ -0.32
PTPRF-211ENST00000467464 A0A087X0B3 334 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 LACTBL1A8MY62 500 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 ANKRD63C9JTQ0 380 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 M0QZQ0 153 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 NRG2O14511 850 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-211ENST00000467464 PPEF2O14830 753 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 HNRNPDLO14979 420 aaKnown RBP13.04□□□□□ -0.32
PTPRF-211ENST00000467464 OGTO15294 1046 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 XYLBO75191 536 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 PPP1R37O75864 691 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 SEC24AO95486 1093 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 SRFP11831 508 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 AOC1P19801 751 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 DDIT3P35638 169 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 LIG4P49917 911 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 GUCY2FP51841 1108 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 SLC5A9Q2M3M2 681 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 ZC2HC1CQ53FD0 456 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-211ENST00000467464 PARM1Q6UWI2 310 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 RTL10Q7L3V2 364 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 NPAS3Q8IXF0 933 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 SIX5Q8N196 739 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 ZNF461Q8TAF7 563 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 DDX12PQ92771 950 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 FGF13Q92913 245 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 BICD1Q96G01 975 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 FAM86C1Q9NVL1 165 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 WNT16Q9UBV4 365 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 CPSF3Q9UKF6 684 aaKnown RBP13.04□□□□□ -0.32
PTPRF-211ENST00000467464 PCDHB8Q9UN66 801 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 STYXL1Q9Y6J8 313 aa13.04□□□□□ -0.32
PTPRF-211ENST00000467464 ZFP37Q9Y6Q3 630 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms