RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 CLDN3O15551 220 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 TOM1L1O75674 476 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 NPTXRO95502 500 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 YARSP54577 528 aaKnown RBP13.68□□□□□ -0.22
HDAC4-207ENST00000461113 GTF2BQ00403 316 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 CUL4BQ13620 913 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 POSTNQ15063 836 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 KYAT1Q16773 422 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 ZNF568Q3ZCX4 644 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 SLFN12LQ6IEE8 588 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 CCDC149Q6ZUS6 474 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 GRAMD1CQ8IYS0 662 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 RSAD2Q8WXG1 361 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 CASD1Q96PB1 797 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 ACO2Q99798 780 aaKnown RBP13.68□□□□□ -0.22
HDAC4-207ENST00000461113 CCDC94Q9BW85 323 aaPredicted RBP13.68□□□□□ -0.22
HDAC4-207ENST00000461113 TARS2Q9BW92 718 aaKnown RBP13.68□□□□□ -0.22
HDAC4-207ENST00000461113 MRPL9Q9BYD2 267 aaKnown RBP13.68□□□□□ -0.22
HDAC4-207ENST00000461113 TMEM117Q9H0C3 514 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 DLGAP2Q9P1A6 1054 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 KANSL3Q9P2N6 904 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 PARP2Q9UGN5 583 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 ATRXP46100 2492 aa13.68□□□□□ -0.22
HDAC4-207ENST00000461113 USP24Q9UPU5 2620 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 CARNS1A5YM72 827 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 PRR5-ARHGAP8B1AHC4 643 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 GADD45BO75293 160 aaPredicted RBP13.67□□□□□ -0.22
HDAC4-207ENST00000461113 RPN1P04843 607 aaKnown RBP13.67□□□□□ -0.22
HDAC4-207ENST00000461113 ARHGAP8P85298 464 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 HSP90AA2PQ14568 343 aaPredicted RBP13.67□□□□□ -0.22
HDAC4-207ENST00000461113 NT5DC1Q5TFE4 455 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 MPZL3Q6UWV2 235 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 MRPL10Q7Z7H8 261 aaKnown RBP13.67□□□□□ -0.22
HDAC4-207ENST00000461113 SLC39A11Q8N1S5 342 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 GPR161Q8N6U8 529 aaKnown RBP13.67□□□□□ -0.22
HDAC4-207ENST00000461113 AUTS2Q8WXX7 1259 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 KCNN1Q92952 543 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 FAM193BQ96PV7 902 aaPredicted RBP13.67□□□□□ -0.22
HDAC4-207ENST00000461113 RPS6KC1Q96S38 1066 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 RTKNQ9BST9 563 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 APOL6Q9BWW8 343 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 PDZD7Q9H5P4 517 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 RSAD1Q9HA92 442 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 IGSF9Q9P2J2 1179 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 ANKFY1Q9P2R3 1169 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 SIT1Q9Y3P8 196 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 IPPQ9Y573 584 aa13.67□□□□□ -0.22
HDAC4-207ENST00000461113 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.66□□□□□ -0.22
HDAC4-207ENST00000461113 EIF3DO15371 548 aaKnown RBP eCLIP13.66□□□□□ -0.22
HDAC4-207ENST00000461113 NR1I2O75469 434 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 MCF2P10911 925 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 RNASELQ05823 741 aaKnown RBP13.66□□□□□ -0.22
HDAC4-207ENST00000461113 L1TD1Q5T7N2 865 aaKnown RBP13.66□□□□□ -0.22
HDAC4-207ENST00000461113 HS2ST1Q7LGA3 356 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 GPR149Q86SP6 731 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 CDR2LQ86X02 465 aaPredicted RBP13.66□□□□□ -0.22
HDAC4-207ENST00000461113 MAP4K3Q8IVH8 894 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 ELOA2Q8IYF1 753 aaPredicted RBP13.66□□□□□ -0.22
HDAC4-207ENST00000461113 LRRC43Q8N309 656 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 ENGASEQ8NFI3 743 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 SLC22A17Q8WUG5 538 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 SMARCE1Q969G3 411 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 EIF2AQ9BY44 585 aaKnown RBP13.66□□□□□ -0.22
HDAC4-207ENST00000461113 TOPORSQ9NS56 1045 aaPredicted RBP13.66□□□□□ -0.22
HDAC4-207ENST00000461113 RNF19AQ9NV58 838 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 INPP5FQ9Y2H2 1132 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 GIT1Q9Y2X7 761 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 ARID2Q68CP9 1835 aa13.66□□□□□ -0.22
HDAC4-207ENST00000461113 UBE4BO95155 1302 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 SPDYE4A6NLX3 237 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 NT5C1B-RDH14C9J2C7 533 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 HARSP12081 509 aaKnown RBP13.65□□□□□ -0.22
HDAC4-207ENST00000461113 CASP1P29466 404 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 LMNB2Q03252 620 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 SNW1Q13573 536 aaKnown RBP13.65□□□□□ -0.22
HDAC4-207ENST00000461113 BMS1Q14692 1282 aaKnown RBP13.65□□□□□ -0.22
HDAC4-207ENST00000461113 NOLC1Q14978 699 aaKnown RBP eCLIP13.65□□□□□ -0.22
HDAC4-207ENST00000461113 KMT5BQ4FZB7 885 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 ZC2HC1CQ53FD0 456 aaPredicted RBP13.65□□□□□ -0.22
HDAC4-207ENST00000461113 NOMO2Q5JPE7 1267 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 UBXN11Q5T124 520 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 TAS1R3Q7RTX0 852 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 ZNF598Q86UK7 904 aaKnown RBP13.65□□□□□ -0.22
HDAC4-207ENST00000461113 MAML2Q8IZL2 1156 aaPredicted RBP13.65□□□□□ -0.22
HDAC4-207ENST00000461113 SFXN1Q9H9B4 322 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 SLC39A2Q9NP94 309 aa13.65□□□□□ -0.22
HDAC4-207ENST00000461113 PRPF6O94906 941 aaKnown RBP13.64□□□□□ -0.23
HDAC4-207ENST00000461113 PIGRP01833 764 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 MYBP10242 640 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 GLULP15104 373 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 PTMSP20962 102 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 SNRPFP62306 86 aaKnown RBP13.64□□□□□ -0.23
HDAC4-207ENST00000461113 DPYDQ12882 1025 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 KCNB1Q14721 858 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 EEF1DP3Q658K8 133 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 PHLDB3Q6NSJ2 640 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 VPS52Q8N1B4 723 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 SLC44A3Q8N4M1 653 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 GOLGA5Q8TBA6 731 aa13.64□□□□□ -0.23
HDAC4-207ENST00000461113 HELQQ8TDG4 1101 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms