RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 RBM41Q96IZ5 413 aaKnown RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 AGPAT3Q9NRZ7 376 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 KRT82Q9NSB4 513 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 LRRC4BQ9NT99 713 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 ATF5Q9Y2D1 282 aaPredicted RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 FRMD4BQ9Y2L6 1034 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 SPATA31A1Q5TZJ5 1347 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 E7ENQ6 273 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 PLS3P13797 630 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 SPARCL1Q14515 664 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 PDCD2Q16342 344 aaPredicted RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 CTC1Q2NKJ3 1217 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 CADPS2Q86UW7 1296 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 ETNPPLQ8TBG4 499 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 DENND1AQ8TEH3 1009 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 CLPTM1LQ96KA5 538 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 MAK16Q9BXY0 300 aaKnown RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 VPS37BQ9H9H4 285 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 HEY2Q9UBP5 337 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 GOLGA8IPA6NC78 632 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 GOLGA8JA6NMD2 632 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 ATP5HO75947 161 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 PSMG1O95456 288 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 RALAP11233 206 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 RPA1P27694 616 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 MAGEA4P43358 317 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 NOP14P78316 857 aaKnown RBP12.43□□□□□ -0.42
CPSF3-202ENST00000460593 MCL1Q07820 350 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 MTMR2Q13614 643 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 LRRC36Q1X8D7 754 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 WDR72Q3MJ13 1102 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 PCNX4Q63HM2 1172 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 GSTA5Q7RTV2 222 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 ANKMY2Q8IV38 441 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 SYCP3Q8IZU3 236 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 SLC25A41Q8N5S1 370 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 ZNF75CPQ92670 426 aaPredicted RBP12.43□□□□□ -0.42
CPSF3-202ENST00000460593 TUBGCP5Q96RT8 1024 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 EIF2AK1Q9BQI3 630 aaKnown RBP12.43□□□□□ -0.42
CPSF3-202ENST00000460593 ZNF287Q9HBT7 754 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 ZBTB5O15062 677 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 GYG2O15488 501 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 SKIP12755 728 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 CCNFP41002 786 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 SSR1P43307 286 aaKnown RBP12.43□□□□□ -0.42
CPSF3-202ENST00000460593 P3H1Q32P28 736 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 ASPRV1Q53RT3 343 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 HS2ST1Q7LGA3 356 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 LRRC6Q86X45 466 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 VPS52Q8N1B4 723 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 EPS8L1Q8TE68 723 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 PTPRN2Q92932 1015 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 MCUR1Q96AQ8 359 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 ANKRD27Q96NW4 1050 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 TRAIPQ9BWF2 469 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 DCLK3Q9C098 648 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 FHDC1Q9C0D6 1143 aaPredicted RBP12.43□□□□□ -0.42
CPSF3-202ENST00000460593 EURLQ9NYK6 297 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 LGALS13Q9UHV8 139 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 ANAPC7Q9UJX3 599 aa12.43□□□□□ -0.42
CPSF3-202ENST00000460593 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.43□□□□□ -0.42
CPSF3-202ENST00000460593 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.42□□□□□ -0.42
CPSF3-202ENST00000460593 GSC2O15499 205 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 GGPS1O95749 300 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 SERPINB3P29508 390 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 PSMC4P43686 418 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 BFSP1Q12934 665 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 KAZNQ674X7 775 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 ZFAND2BQ8WV99 257 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 HAUS1Q96CS2 278 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 FSCN2O14926 492 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 MSH4O15457 936 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 CETN2P41208 172 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 GAD2Q05329 585 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 SLC34A1Q06495 639 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 PTK6Q13882 451 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 PDK4Q16654 411 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 BMT2Q1RMZ1 405 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 CNPY1Q3B7I2 92 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 ZNF365Q70YC5 407 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 PDCD7Q8N8D1 485 aaKnown RBP12.42□□□□□ -0.42
CPSF3-202ENST00000460593 PLEKHO2Q8TD55 490 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 FBXO41Q8TF61 875 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 LENG9Q96B70 501 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 SMC6Q96SB8 1091 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 MKNK1Q9BUB5 465 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 DDX60LQ5H9U9 1706 aaKnown RBP12.42□□□□□ -0.42
CPSF3-202ENST00000460593 PI4K2BG5E9Z4 385 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 BAG2O95816 211 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 KRT4P19013 534 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 CD58P19256 250 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 RTP1P59025 263 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 FMO1Q01740 532 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 ZBTB16Q05516 673 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 LRRC23Q53EV4 343 aaPredicted RBP12.42□□□□□ -0.42
CPSF3-202ENST00000460593 ODR4Q5SWX8 454 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 SH3TC2Q8TF17 1288 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 ITFG2Q969R8 447 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 NDNQ99608 321 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms