RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 PRKD2Q9BZL6 878 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 BACE2Q9Y5Z0 518 aa13.14□□□□□ -0.31
USP40-210ENST00000454354 CACNA1HO95180 2353 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 A0A0B4J269 797 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 SYN3O14994 580 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 OGTO15294 1046 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 ADAM12O43184 909 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 N4BP1O75113 896 aaKnown RBP13.13□□□□□ -0.31
USP40-210ENST00000454354 PPP1R37O75864 691 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 ADRB2P07550 413 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 POU2F2P09086 479 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 HNRNPA1P09651 372 aaKnown RBP eCLIP13.13□□□□□ -0.31
USP40-210ENST00000454354 PDIA4P13667 645 aaKnown RBP13.13□□□□□ -0.31
USP40-210ENST00000454354 NMT1P30419 496 aaKnown RBP13.13□□□□□ -0.31
USP40-210ENST00000454354 PLA2G5P39877 138 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 TNFSF9P41273 254 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 MATR3P43243 847 aaKnown RBP eCLIP13.13□□□□□ -0.312e-6■■■□□ 18.6
USP40-210ENST00000454354 RAB33AQ14088 237 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 RSPO2Q6UXX9 243 aaPredicted RBP13.13□□□□□ -0.31
USP40-210ENST00000454354 CCDC73Q6ZRK6 1079 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 ANKS3Q6ZW76 656 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 LINC00301Q8NCQ3 95 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 DDX12PQ92771 950 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 STAMQ92783 540 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 HVCN1Q96D96 273 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 DNAJC19Q96DA6 116 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 TSPAN18Q96SJ8 248 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 STRA6Q9BX79 667 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 KCNH6Q9H252 994 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 SEL1LQ9UBV2 794 aa13.13□□□□□ -0.31
USP40-210ENST00000454354 A0A087X0B3 334 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 MYMKA6NI61 221 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 I3L4J1 428 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 PPP6R2O75170 966 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 YEATS4O95619 227 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 MYBP10242 640 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 GAP43P17677 238 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 CYP3A5P20815 502 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 LRPAP1P30533 357 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 OR1D2P34982 312 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 PPP2R3AQ06190 1150 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 STK38Q15208 465 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 ZBTB6Q15916 424 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 ENOX2Q16206 610 aaKnown RBP13.12□□□□□ -0.31
USP40-210ENST00000454354 ZBTB41Q5SVQ8 909 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 LIN9Q5TKA1 542 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 SLC8B1Q6J4K2 584 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 SV2BQ7L1I2 683 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 RTL10Q7L3V2 364 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 ZNF720Q7Z2F6 126 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 SFR1Q86XK3 245 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 PBXIP1Q96AQ6 731 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 SUSD3Q96L08 255 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 MSTO1Q9BUK6 570 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 ZHX3Q9H4I2 956 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 EPS15L1Q9UBC2 864 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 TUBGCP4Q9UGJ1 667 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 LIMD1Q9UGP4 676 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 CPSF3Q9UKF6 684 aaKnown RBP13.12□□□□□ -0.31
USP40-210ENST00000454354 CDY1Q9Y6F8 540 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 STYXL1Q9Y6J8 313 aa13.12□□□□□ -0.31
USP40-210ENST00000454354 FRMD3A2A2Y4 597 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 SPTLC2O15270 562 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 TBC1D4O60343 1298 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 ASGR2P07307 311 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 C8AP07357 584 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 STAT6P42226 847 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 AARSP49588 968 aaKnown RBP eCLIP13.11□□□□□ -0.31
USP40-210ENST00000454354 MRPL58Q14197 206 aaKnown RBP13.11□□□□□ -0.31
USP40-210ENST00000454354 UVSSAQ2YD98 709 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 ZC2HC1CQ53FD0 456 aaPredicted RBP13.11□□□□□ -0.31
USP40-210ENST00000454354 VARS2Q5ST30 1063 aaKnown RBP13.11□□□□□ -0.31
USP40-210ENST00000454354 DYMQ7RTS9 669 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 CD302Q8IX05 232 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 KIF12Q96FN5 646 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 ZNF396Q96N95 335 aaPredicted RBP13.11□□□□□ -0.31
USP40-210ENST00000454354 OLFML3Q9NRN5 406 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 IGSF9Q9P2J2 1179 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 UBQLN1Q9UMX0 589 aaKnown RBP13.11□□□□□ -0.31
USP40-210ENST00000454354 NUB1Q9Y5A7 615 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 GTF3C3Q9Y5Q9 886 aa13.11□□□□□ -0.31
USP40-210ENST00000454354 LACTBL1A8MY62 500 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 ANKRD63C9JTQ0 380 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 M0QZQ0 153 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 XPOTO43592 962 aaKnown RBP13.1□□□□□ -0.31
USP40-210ENST00000454354 F13A1P00488 732 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 MCM4P33991 863 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 POU5F1Q01860 360 aaKnown RBP13.1□□□□□ -0.31
USP40-210ENST00000454354 ROR1Q01973 937 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 PPM1LQ5SGD2 360 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 AXDND1Q5T1B0 1012 aaPredicted RBP13.1□□□□□ -0.31
USP40-210ENST00000454354 SLFN12LQ6IEE8 588 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 FBXL6Q8N531 539 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 SLC7A14Q8TBB6 771 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 FAM122AQ96E09 287 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 MYADMQ96S97 322 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 RPF1Q9H9Y2 349 aaKnown RBP13.1□□□□□ -0.31
USP40-210ENST00000454354 KCNK12Q9HB15 430 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 PIDD1Q9HB75 910 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms