RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 TUBGCP4Q9UGJ1 667 aa13.88□□□□□ -0.19
PRPF40A-203ENST00000448428 CPSF3Q9UKF6 684 aaKnown RBP13.88□□□□□ -0.19
PRPF40A-203ENST00000448428 PCDHB13Q9Y5F0 798 aa13.88□□□□□ -0.19
PRPF40A-203ENST00000448428 PI4K2BG5E9Z4 385 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 TGM5O43548 720 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 TRAPPC3O43617 180 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 GLUD1P00367 558 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 C1RP00736 705 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 TKTP29401 623 aaKnown RBP13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 ADSSP30520 456 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 ACOT2P49753 483 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 KRT85P78386 507 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 CREMQ03060 361 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 PPP2R3AQ06190 1150 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 PSMD5Q16401 504 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 ATAT1Q5SQI0 421 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 L1TD1Q5T7N2 865 aaKnown RBP13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 CNNM4Q6P4Q7 775 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 HPS3Q969F9 1004 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 FAM212AQ96EL1 285 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 SPATA32Q96LK8 384 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 C7orf25Q9BPX7 421 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 POMKQ9H5K3 350 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 SFXN1Q9H9B4 322 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 MAN1C1Q9NR34 630 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 AGO2Q9UKV8 859 aaKnown RBP13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 KCNH3Q9ULD8 1083 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 EXOC7Q9UPT5 735 aa13.87□□□□□ -0.19
PRPF40A-203ENST00000448428 SPDYE4A6NLX3 237 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 ADAM12O43184 909 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 PRPF6O94906 941 aaKnown RBP13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 CASP1P29466 404 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 MTHFRP42898 656 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 ASIC1P78348 528 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 ALCAMQ13740 583 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 POSTNQ15063 836 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 PDXDC1Q6P996 788 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 CRELD2Q6UXH1 353 aaPredicted RBP13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 GPR149Q86SP6 731 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 RNF135Q8IUD6 432 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 SYCP3Q8IZU3 236 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 GLIS3Q8NEA6 775 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 HDAC7Q8WUI4 952 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 POMGNT1Q8WZA1 660 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 KIF12Q96FN5 646 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 RIPOR3Q96MK2 946 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 NECTIN4Q96NY8 510 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 TSPAN18Q96SJ8 248 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 BLZF1Q9H2G9 400 aa13.86□□□□□ -0.19
PRPF40A-203ENST00000448428 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 CCDC195A0A1B0GUA6 201 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 A0A1B0GVL5 298 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 RFPL2O75678 378 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 CYP3A5P20815 502 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 CMA1P23946 247 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 LRPAP1P30533 357 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 AFMP43652 599 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 GUCY2FP51841 1108 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 JADE1Q6IE81 842 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 RSPO2Q6UXX9 243 aaPredicted RBP13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 CD302Q8IX05 232 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 KREMEN2Q8NCW0 462 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 ZSWIM2Q8NEG5 633 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 CMASQ8NFW8 434 aaPredicted RBP13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 PLEKHA4Q9H4M7 779 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 MAGEF1Q9HAY2 307 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 DPP7Q9UHL4 492 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 SERTAD1Q9UHV2 236 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 UBQLN1Q9UMX0 589 aaKnown RBP13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 NUB1Q9Y5A7 615 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 ATP6V1DQ9Y5K8 247 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 MYO10Q9HD67 2058 aa13.85□□□□□ -0.19
PRPF40A-203ENST00000448428 DENND4AQ7Z401 1863 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 MUC3AQ02505 3323 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 ACTN4O43707 911 aaKnown RBP13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 SLFN14P0C7P3 912 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 PFKFB1P16118 471 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 SP100P23497 879 aaPredicted RBP13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 OR1D2P34982 312 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 HOXD13P35453 343 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 POU5F1Q01860 360 aaKnown RBP13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 CUL4BQ13620 913 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 RAB33AQ14088 237 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 SPATA1Q5VX52 437 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 ELMSAN1Q6PJG2 1045 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 C15orf39Q6ZRI6 1047 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 ANKS3Q6ZW76 656 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 GRAMD1CQ8IYS0 662 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 SUSD3Q96L08 255 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 PYM1Q9BRP8 204 aaKnown RBP13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 C1QTNF1Q9BXJ1 281 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 SCAND2PQ9GZW5 306 aaPredicted RBP13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 ASB7Q9H672 318 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 TMEM206Q9H813 350 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 MTRRQ9UBK8 725 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 BACE2Q9Y5Z0 518 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 DOCK6Q96HP0 2047 aa13.84□□□□□ -0.19
PRPF40A-203ENST00000448428 SYN3O14994 580 aa13.83□□□□□ -0.2
PRPF40A-203ENST00000448428 XPOTO43592 962 aaKnown RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms