RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 BRD2P25440 801 aaKnown RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 SLC1A1P43005 524 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 EPHB1P54762 984 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 BCAR1P56945 870 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 BEX3Q00994 111 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 CUL1Q13616 776 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 GLE1Q53GS7 698 aaKnown RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 UBA3Q8TBC4 463 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 SCYL1Q96KG9 808 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 KLC2Q9H0B6 622 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 HMX1Q9NP08 348 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 NFU1Q9UMS0 254 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 TACC3Q9Y6A5 838 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 FOXN3O00409 490 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 B3GAT3O94766 335 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 COG7P83436 770 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 MAP2K5Q13163 448 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 BIRC2Q13490 618 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 CDKAL1Q5VV42 579 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 KCTD16Q68DU8 428 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 ZNF677Q86XU0 584 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 WHAMMQ8TF30 809 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 CFAP57Q96MR6 1250 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 DDX47Q9H0S4 455 aaKnown RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 TRIM10Q9UDY6 481 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 SLC8A2Q9UPR5 921 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 ATP9AO75110 1047 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 SP3Q02447 781 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 SEPT6Q14141 434 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 EFCAB13Q8IY85 973 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 MCEEQ96PE7 176 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 MED15Q96RN5 788 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 NOC2LQ9Y3T9 749 aaKnown RBP7.84□□□□□ -1.15
SYNE1-213ENST00000448038 RIPK3Q9Y572 518 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 HSD17B4P51659 736 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 IL17AQ16552 155 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 AMHR2Q16671 573 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 CENPUQ71F23 418 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 B4GALNT4Q76KP1 1039 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 TAS1R2Q8TE23 839 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 PLAGL2Q9UPG8 496 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 TRAF3IP3Q9Y228 551 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 FNDC3AQ9Y2H6 1198 aaKnown RBP7.84□□□□□ -1.15
SYNE1-213ENST00000448038 AFG3L2Q9Y4W6 797 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 CASZ1Q86V15 1759 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 IGKV6D-41A0A0C4DH26 115 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 GRID2IPA4D2P6 1211 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 BTBD19C9JJ37 291 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 H3BRJ5 948 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 ADCY3O60266 1144 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 CXCL8P10145 99 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 FGFR4P22455 802 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 MSH2P43246 934 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 SULT1E1P49888 294 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 NCAPHQ15003 741 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 GOLGA7BQ2TAP0 167 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 TAF2Q6P1X5 1199 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 C1orf186Q6ZWK4 172 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 TRAPPC11Q7Z392 1133 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 DCP1BQ8IZD4 617 aaKnown RBP7.84□□□□□ -1.15
SYNE1-213ENST00000448038 SHCBP1Q8NEM2 672 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 PYROXD1Q8WU10 500 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 USP20Q9Y2K6 914 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 DPYSL4O14531 572 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 GRAP2O75791 330 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 CC2D1AQ6P1N0 951 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-213ENST00000448038 LBX2Q6XYB7 198 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 SH3RF1Q7Z6J0 888 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 VPS52Q8N1B4 723 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.84□□□□□ -1.15
SYNE1-213ENST00000448038 ETNPPLQ8TBG4 499 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 DHX38Q92620 1227 aaKnown RBP7.84□□□□□ -1.15
SYNE1-213ENST00000448038 CFAP36Q96G28 342 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 RNPC3Q96LT9 517 aaKnown RBP7.84□□□□□ -1.15
SYNE1-213ENST00000448038 NFASCO94856 1347 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 SPATA31C2B4DYI2 1134 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 THOC5Q13769 683 aaKnown RBP7.84□□□□□ -1.15
SYNE1-213ENST00000448038 PLCB4Q15147 1175 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 SV2AQ7L0J3 742 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 WDR49Q8IV35 697 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 TRIM59Q8IWR1 403 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 FAM71BQ8TC56 605 aa7.84□□□□□ -1.15
SYNE1-213ENST00000448038 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.84□□□□□ -1.15
SYNE1-213ENST00000448038 WNT7AO00755 349 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ATMINO43313 823 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ZC3H11AO75152 810 aaKnown RBP eCLIP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 PLEKP08567 350 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 KRT10P13645 584 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 YY1P25490 414 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 RAPH1Q70E73 1250 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 SEPT5Q99719 369 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 TMEM117Q9H0C3 514 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ABCB6Q9NP58 842 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 KLHL11Q9NVR0 708 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 TTC7AQ9ULT0 858 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 HPCAL4Q9UM19 191 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 PLIN4Q96Q06 1357 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 FAM237AA0A1B0GTK4 181 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 TMEM88BA6NKF7 163 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 GOLGA8CPA6NN73 597 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms