RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 GPRC5CQ9NQ84 441 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 MARCOQ9UEW3 520 aaPredicted RBP9.6□□□□□ -0.87
COPB1-202ENST00000439561 G3BP2Q9UN86 482 aaKnown RBP9.6□□□□□ -0.87
COPB1-202ENST00000439561 ZNF335Q9H4Z2 1342 aaPredicted RBP9.6□□□□□ -0.87
COPB1-202ENST00000439561 CCDC195A0A1B0GUA6 201 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 TMEM150BA6NC51 233 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 MEIS2O14770 477 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 EIF3DO15371 548 aaKnown RBP eCLIP9.6□□□□□ -0.87
COPB1-202ENST00000439561 BANF1O75531 89 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 LINGO3P0C6S8 592 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 POLR2MP0CAP2 368 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 MYCLP12524 364 aaPredicted RBP9.6□□□□□ -0.87
COPB1-202ENST00000439561 ETS1P14921 441 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 CAV1Q03135 178 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 KDSRQ06136 332 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 MGAT5Q09328 741 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 THOC5Q13769 683 aaKnown RBP9.6□□□□□ -0.87
COPB1-202ENST00000439561 KPNB1Q14974 876 aaKnown RBP9.6□□□□□ -0.87
COPB1-202ENST00000439561 XKR9Q5GH70 373 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 RNF43Q68DV7 783 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 ETNPPLQ8TBG4 499 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 ARHGEF1Q92888 912 aaKnown RBP9.6□□□□□ -0.87
COPB1-202ENST00000439561 PIDD1Q9HB75 910 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 OLFML3Q9NRN5 406 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 ARMCX1Q9P291 453 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.6□□□□□ -0.87
COPB1-202ENST00000439561 PPARGC1AQ9UBK2 798 aaKnown RBP9.6□□□□□ -0.87
COPB1-202ENST00000439561 GTF3C4Q9UKN8 822 aa9.6□□□□□ -0.87
COPB1-202ENST00000439561 SLITRK3O94933 977 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 GH2P01242 217 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 CHRNB2P17787 502 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 VHLP40337 213 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 WDR4P57081 412 aaKnown RBP9.59□□□□□ -0.87
COPB1-202ENST00000439561 YWHAGP61981 247 aaKnown RBP eCLIP9.59□□□□□ -0.87
COPB1-202ENST00000439561 GRIK3Q13003 919 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 KIF22Q14807 665 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 ABCB5Q2M3G0 1257 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 ANO7Q6IWH7 933 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 CENPUQ71F23 418 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 DPH6Q7L8W6 267 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 ZSWIM2Q8NEG5 633 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 SCG3Q8WXD2 468 aaKnown RBP9.59□□□□□ -0.87
COPB1-202ENST00000439561 CNKSR1Q969H4 720 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 CCDC134Q9H6E4 229 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 DCLRE1BQ9H816 532 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 KCNQ5Q9NR82 932 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 UVRAGQ9P2Y5 699 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 A0A1W2PPM1 405 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 UBAP1LF5GYI3 381 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 MT-ND3P03897 115 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 ENO1P06733 434 aaKnown RBP9.59□□□□□ -0.87
COPB1-202ENST00000439561 TPBGLP0DKB5 382 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 ADRA1DP25100 572 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 PGM1P36871 562 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 BASP1P80723 227 aaKnown RBP9.59□□□□□ -0.87
COPB1-202ENST00000439561 ZNF394Q53GI3 561 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 RFWD3Q6PCD5 774 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 ISLR2Q6UXK2 745 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 HAUS6Q7Z4H7 955 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 ARHGAP24Q8N264 748 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 DCLK3Q9C098 648 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 SMYD3Q9H7B4 428 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 TMEM206Q9H813 350 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 ETAA1Q9NY74 926 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 SNED1Q8TER0 1413 aa9.59□□□□□ -0.87
COPB1-202ENST00000439561 C2orf71A6NGG8 1288 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 HNRNPDLO14979 420 aaKnown RBP9.58□□□□□ -0.88
COPB1-202ENST00000439561 CCDC22O60826 627 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 PEX11AO75192 247 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 NDUFB10O96000 172 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 ATP6V1C1P21283 382 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 CLK2P49760 499 aaKnown RBP9.58□□□□□ -0.88
COPB1-202ENST00000439561 FASTKD3Q14CZ7 662 aaKnown RBP9.58□□□□□ -0.88
COPB1-202ENST00000439561 USP37Q86T82 979 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 MORC4Q8TE76 937 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 RBM17Q96I25 401 aaKnown RBP9.58□□□□□ -0.88
COPB1-202ENST00000439561 CCDC17Q96LX7 622 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 C10orf88Q9H8K7 445 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 NMRK1Q9NWW6 199 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 ANKFY1Q9P2R3 1169 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 PCDHB4Q9Y5E5 795 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 ROBO3Q96MS0 1386 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 H3BRJ5 948 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 TLR3O15455 904 aaKnown RBP9.58□□□□□ -0.88
COPB1-202ENST00000439561 LMNAP02545 664 aaKnown RBP9.58□□□□□ -0.88
COPB1-202ENST00000439561 PTPN4P29074 926 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 SHMT1P34896 483 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 TUBP50607 506 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 CACNA2D1P54289 1103 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 GALNTL6Q49A17 601 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 KHDC1Q4VXA5 237 aaKnown RBP9.58□□□□□ -0.88
COPB1-202ENST00000439561 SLC10A5Q5PT55 438 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 RHPN2Q8IUC4 686 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 ZFPM1Q8IX07 1006 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 SLC25A41Q8N5S1 370 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 RBBP8NLQ8NC74 664 aaPredicted RBP9.58□□□□□ -0.88
COPB1-202ENST00000439561 TAS1R2Q8TE23 839 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 RSAD2Q8WXG1 361 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 SYT15Q9BQS2 421 aa9.58□□□□□ -0.88
COPB1-202ENST00000439561 TMEM109Q9BVC6 243 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms