RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 MAPK7Q13164 816 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 IL17AQ16552 155 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 LPAL2Q16609 132 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 ZNF568Q3ZCX4 644 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 XKR4Q5GH76 650 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 TTC38Q5R3I4 469 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 ZBTB41Q5SVQ8 909 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 SLC8B1Q6J4K2 584 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 PDXDC1Q6P996 788 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 ZC3H14Q6PJT7 736 aaKnown RBP8.89□□□□□ -0.99
VIM-202ENST00000421459 ANKS3Q6ZW76 656 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 KCNK18Q7Z418 384 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 ZNF687Q8N1G0 1237 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 ZNF461Q8TAF7 563 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 ERMNQ8TAM6 284 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 CLDN23Q96B33 292 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 C8orf76Q96K31 380 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 RUSC1Q9BVN2 902 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 DLL3Q9NYJ7 618 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 NCDNQ9UBB6 729 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 LRWD1Q9UFC0 647 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 FBXL5Q9UKA1 691 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 FBXO4Q9UKT5 387 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 KCNH3Q9ULD8 1083 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 TNFSF13BQ9Y275 285 aa8.89□□□□□ -0.99
VIM-202ENST00000421459 TIMM13Q9Y5L4 95 aaPredicted RBP8.89□□□□□ -0.99
VIM-202ENST00000421459 GVINP1Q7Z2Y8 2422 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 ARHGEF37A1IGU5 675 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 PRRG1O14668 218 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 SLC16A4O15374 487 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 TRAPPC3O43617 180 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 POU2F2P09086 479 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 OR4Q2P0C623 313 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 TGM1P22735 817 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 ELF1P32519 619 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 EFNA5P52803 228 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 YARSP54577 528 aaKnown RBP8.88□□□□□ -0.99
VIM-202ENST00000421459 PFKPQ01813 784 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 TWF1Q12792 350 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 MRPL58Q14197 206 aaKnown RBP8.88□□□□□ -0.99
VIM-202ENST00000421459 PUM1Q14671 1186 aaKnown RBP eCLIP8.88□□□□□ -0.993e-9■■■□□ 15.2
VIM-202ENST00000421459 PPP2R5AQ15172 486 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 SAFBQ15424 915 aaKnown RBP eCLIP8.88□□□□□ -0.99
VIM-202ENST00000421459 ZNF528Q3MIS6 628 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 CTXN3Q4LDR2 81 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 ZNF852Q6ZMS4 543 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 RNF19BQ6ZMZ0 732 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 ZBTB44Q8NCP5 570 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 TTC8Q8TAM2 541 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 SNX29Q8TEQ0 813 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 ATRIPQ8WXE1 791 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 KIFAP3Q92845 792 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 ELSPBP1Q96BH3 223 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 RSPRY1Q96DX4 576 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 UROC1Q96N76 676 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 PLIN2Q99541 437 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 TCHPQ9BT92 498 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 MMTAG2Q9BU76 263 aaKnown RBP8.88□□□□□ -0.99
VIM-202ENST00000421459 CCDC94Q9BW85 323 aaPredicted RBP8.88□□□□□ -0.99
VIM-202ENST00000421459 OSBPL6Q9BZF3 934 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 HAPLN2Q9GZV7 340 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 PARD6AQ9NPB6 346 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 GDE1Q9NZC3 331 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 CEP72Q9P209 647 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 TUBGCP4Q9UGJ1 667 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 PCDHB6Q9Y5E3 794 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 INSL5Q9Y5Q6 135 aa8.88□□□□□ -0.99
VIM-202ENST00000421459 NOTCH4Q99466 2003 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 NPHP3-ACAD11A0A0J9YXS1 232 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 DCDC2BA2VCK2 349 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 VNN2O95498 520 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 MYL4P12829 197 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 TDGF1P13385 188 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 ATF2P15336 505 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 KCNE1P15382 129 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 PROZP22891 400 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 GDI1P31150 447 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 SOX9P48436 509 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 FXR2P51116 673 aaKnown RBP eCLIP8.87□□□□□ -0.99
VIM-202ENST00000421459 GUCY2FP51841 1108 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 ATXN1P54253 815 aaKnown RBP8.87□□□□□ -0.99
VIM-202ENST00000421459 ADCY1Q08828 1119 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 DMWDQ09019 674 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 SRSF5Q13243 272 aaKnown RBP8.87□□□□□ -0.99
VIM-202ENST00000421459 PTGDRQ13258 359 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 GAS6Q14393 721 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 TEAD2Q15562 447 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 ZRSR1Q15695 479 aaKnown RBP8.87□□□□□ -0.99
VIM-202ENST00000421459 SLC10A6Q3KNW5 377 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 STXBP5Q5T5C0 1151 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 RINT1Q6NUQ1 792 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 VITQ6UXI7 678 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 C1orf186Q6ZWK4 172 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 TCEAL8Q8IYN2 117 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 NELL1Q92832 810 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 TBC1D32Q96NH3 1257 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 ASB16Q96NS5 453 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 ACAP3Q96P50 834 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 PGLYRP2Q96PD5 576 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 TRMT61BQ9BVS5 477 aaKnown RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms