RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PLS3P13797 630 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 GLULP15104 373 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 CEBPBP17676 345 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 GUCY2CP25092 1073 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 HOXA9P31269 272 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 MATR3P43243 847 aaKnown RBP eCLIP12.66□□□□□ -0.38
USP4-204ENST00000416417 GUCY2FP51841 1108 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 SLC10A6Q3KNW5 377 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 ANKS3Q6ZW76 656 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 TMEM161BQ8NDZ6 487 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 NKD2Q969F2 451 aaPredicted RBP12.66□□□□□ -0.38
USP4-204ENST00000416417 TCEAL4Q96EI5 215 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 CNTN3Q9P232 1028 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 SIT1Q9Y3P8 196 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 NUB1Q9Y5A7 615 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 BACE2Q9Y5Z0 518 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 STK24Q9Y6E0 443 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 TRIP11Q15643 1979 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 H3BQV1 296 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 TRAPPC3O43617 180 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 CXCL8P10145 99 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 MAPTP10636 758 aaKnown RBP12.65□□□□□ -0.38
USP4-204ENST00000416417 KCNE1P15382 129 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 TNFSF9P41273 254 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 CDR1P51861 262 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 SLC12A3P55017 1021 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 GRIN1Q05586 938 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 STRN3Q13033 797 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 NOLC1Q14978 699 aaKnown RBP eCLIP12.65□□□□□ -0.38
USP4-204ENST00000416417 RABEP1Q15276 862 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 ARSHQ5FYA8 562 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 ZBTB41Q5SVQ8 909 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 HYIQ5T013 277 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 ADSSL1Q8N142 457 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 SYT2Q8N9I0 419 aaPredicted RBP12.65□□□□□ -0.38
USP4-204ENST00000416417 CORO1BQ9BR76 489 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 CYP4F11Q9HBI6 524 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 SLC2A4RGQ9NR83 387 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 SLC38A7Q9NVC3 462 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 DLGAP2Q9P1A6 1054 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 FBXL5Q9UKA1 691 aa12.65□□□□□ -0.38
USP4-204ENST00000416417 MRPS23Q9Y3D9 190 aaKnown RBP12.65□□□□□ -0.38
USP4-204ENST00000416417 RBM19Q9Y4C8 960 aaKnown RBP12.65□□□□□ -0.38
USP4-204ENST00000416417 TIMM13Q9Y5L4 95 aaPredicted RBP12.65□□□□□ -0.38
USP4-204ENST00000416417 PRRG1O14668 218 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 TBC1D4O60343 1298 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 ELF1P32519 619 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 MCM4P33991 863 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 UVSSAQ2YD98 709 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 CTXN3Q4LDR2 81 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 TMEM119Q4V9L6 283 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 RILPL1Q5EBL4 403 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 SLC8B1Q6J4K2 584 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 HS6ST3Q8IZP7 471 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 BICD1Q96G01 975 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 CDK5RAP3Q96JB5 506 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 TBC1D32Q96NH3 1257 aa12.64□□□□□ -0.39
USP4-204ENST00000416417 ZFP37Q9Y6Q3 630 aaPredicted RBP12.64□□□□□ -0.39
USP4-204ENST00000416417 NOTCH4Q99466 2003 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 TOM1L1O75674 476 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 ABLIM3O94929 683 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 LRG1P02750 347 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 OR4Q2P0C623 313 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 GJA1P17302 382 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 CCR2P41597 374 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 UBXN2BQ14CS0 331 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 SLC44A4Q53GD3 710 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 TANGO2Q6ICL3 276 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 PHLDB3Q6NSJ2 640 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 MTSS1LQ765P7 747 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 GPBP1Q86WP2 473 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 PJA1Q8NG27 643 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 ZNF461Q8TAF7 563 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 KCNG4Q8TDN1 519 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 SPIRE2Q8WWL2 714 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 DDX12PQ92771 950 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 NTPCRQ9BSD7 190 aaKnown RBP12.63□□□□□ -0.39
USP4-204ENST00000416417 MYH15Q9Y2K3 1946 aa12.63□□□□□ -0.39
USP4-204ENST00000416417 PPEF2O14830 753 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 CLDN3O15551 220 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 PTPN2P17706 415 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 SMTNP53814 917 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 STARD6P59095 220 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 MCL1Q07820 350 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 ADCY1Q08828 1119 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 MRPL58Q14197 206 aaKnown RBP12.62□□□□□ -0.39
USP4-204ENST00000416417 GRM2Q14416 872 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 MCM6Q14566 821 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 MLF2Q15773 248 aaPredicted RBP12.62□□□□□ -0.39
USP4-204ENST00000416417 RNF19BQ6ZMZ0 732 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 FAM212AQ96EL1 285 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 KIF12Q96FN5 646 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 SUSD3Q96L08 255 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 ZSWIM3Q96MP5 696 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 PGLYRP2Q96PD5 576 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 REEP2Q9BRK0 252 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 TIPINQ9BVW5 301 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 IKZF4Q9H2S9 585 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 ZHX3Q9H4I2 956 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 C17orf75Q9HAS0 396 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms