RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 PCDHB2Q9Y5E7 798 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 NR2E3Q9Y5X4 410 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 M0QYV0 167 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 INHAP05111 366 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 ITGA7Q13683 1181 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 UGCGQ16739 394 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 NBPF20Q3BBV1 942 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 ARL13BQ3SXY8 428 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 COBLL1Q53SF7 1204 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 CDKAL1Q5VV42 579 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 ZNF677Q86XU0 584 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 BRSK2Q8IWQ3 736 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 ASAP3Q8TDY4 903 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 DHX38Q92620 1227 aaKnown RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 SYN2Q92777 582 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 ZMYM2Q9UBW7 1377 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 CNOT8Q9UFF9 292 aaKnown RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 KIAA1257Q9ULG3 409 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 TIAM2Q8IVF5 1701 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 EIF3CLB5ME19 914 aaKnown RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 IGF2BP3O00425 579 aaKnown RBP eCLIP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 GBP1P32455 592 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 OR1G1P47890 313 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 ALDH7A1P49419 539 aaKnown RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 VPS41P49754 854 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 TAP1Q03518 808 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 KRT17Q04695 432 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 MTMR3Q13615 1198 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 LONRF2Q1L5Z9 754 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 CCDC14Q49A88 953 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 TRIM59Q8IWR1 403 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 TMEM161BQ8NDZ6 487 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 EIF3CQ99613 913 aaKnown RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 WDR35Q9P2L0 1181 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 STAP1Q9ULZ2 295 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 AKAP3O75969 853 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 HSPA6P17066 643 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 CYP27A1Q02318 531 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 FIGNQ5HY92 759 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 KLHDC7AQ5VTJ3 777 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 SLC9A9Q8IVB4 645 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 PDCD7Q8N8D1 485 aaKnown RBP9.06□□□□□ -0.96
SYNE1-211ENST00000413186 RBBP8NLQ8NC74 664 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-211ENST00000413186 TMEM169Q96HH4 297 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 AGPAT1Q99943 283 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 MRPL9Q9BYD2 267 aaKnown RBP9.06□□□□□ -0.96
SYNE1-211ENST00000413186 RNPEPQ9H4A4 650 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 PLCB1Q9NQ66 1216 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 ARAP2Q8WZ64 1704 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 E7EVH7 732 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 ITGB3P05106 788 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 FOSL2P15408 326 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 STMN1P16949 149 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 SLC9A1P19634 815 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 CASP4P49662 377 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 APBA1Q02410 837 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 RNF10Q8N5U6 811 aaKnown RBP9.06□□□□□ -0.96
SYNE1-211ENST00000413186 RUNDC3BQ96NL0 473 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 HTATIP2Q9BUP3 242 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 ZMYND15Q9H091 742 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 CYP3A43Q9HB55 503 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 UTP11Q9Y3A2 253 aaKnown RBP9.06□□□□□ -0.96
SYNE1-211ENST00000413186 CDY2AQ9Y6F7 541 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 KLRC4O43908 158 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 PRPSAP2O60256 369 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 ODC1P11926 461 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 ARL4AP40617 200 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 CAPSQ13938 189 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 BMT2Q1RMZ1 405 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 RUFY4Q6ZNE9 571 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 ACRBPQ8NEB7 543 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 GRK7Q8WTQ7 553 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 LENG9Q96B70 501 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 CPB2Q96IY4 423 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 ITGA11Q9UKX5 1188 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 DSEQ9UL01 958 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 JRKLQ9Y4A0 524 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 MIF4GDA9UHW6 222 aaKnown RBP9.06□□□□□ -0.96
SYNE1-211ENST00000413186 ASGR1P07306 291 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 NCKAP1LP55160 1127 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 EHHADHQ08426 723 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 PSMD6Q15008 389 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 NECAB2Q7Z6G3 386 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 SPATA2LQ8IUW3 424 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-211ENST00000413186 CCDC105Q8IYK2 499 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 FAM76AQ8TAV0 307 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 DPF3Q92784 378 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 RAB17Q9H0T7 212 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 DHX33Q9H6R0 707 aaKnown RBP9.06□□□□□ -0.96
SYNE1-211ENST00000413186 PCDHA2Q9Y5H9 948 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 RGPD3A6NKT7 1758 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-211ENST00000413186 RGPD4Q7Z3J3 1758 aa9.06□□□□□ -0.96
SYNE1-211ENST00000413186 ANO9A1A5B4 782 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 CYP26A1O43174 497 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 PAX3P23760 479 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 ATP5DP30049 168 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 MAN1A1P33908 653 aa9.05□□□□□ -0.96
SYNE1-211ENST00000413186 CTCFP49711 727 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-211ENST00000413186 RBBP5Q15291 538 aaKnown RBP9.05□□□□□ -0.96
SYNE1-211ENST00000413186 C4orf50Q6ZRC1 276 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms