RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 TRAF3IP3Q9Y228 551 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 SSX2IPQ9Y2D8 614 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 NDC80O14777 642 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 ONECUT3O60422 494 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-204ENST00000412568 MRPS9P82933 396 aaKnown RBP11.86□□□□□ -0.51
PTPRF-204ENST00000412568 SGSM1Q2NKQ1 1148 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 KIAA1755Q5JYT7 1200 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 ARHGEF19Q8IW93 802 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 SPIRE2Q8WWL2 714 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 SYN2Q92777 582 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-204ENST00000412568 STMN2Q93045 179 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 CYFIP2Q96F07 1278 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 CFAP36Q96G28 342 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 HSD17B14Q9BPX1 270 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 LRRIQ3A6PVS8 624 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-204ENST00000412568 H3BRB1 525 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 PODXLO00592 558 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 MOCS2O96007 188 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-204ENST00000412568 RAP1GAPP47736 663 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 MYL6P60660 151 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 PDE1BQ01064 536 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 LAMC2Q13753 1193 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 METTL7BQ6UX53 244 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 ARHGEF18Q6ZSZ5 1173 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 PYROXD1Q8WU10 500 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 RILPQ96NA2 401 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 TUT1Q9H6E5 874 aaKnown RBP11.86□□□□□ -0.51
PTPRF-204ENST00000412568 KCND1Q9NSA2 647 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 COL20A1Q9P218 1284 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 ZSCAN5CA6NGD5 496 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-204ENST00000412568 PDGFRAP16234 1089 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 ADCYAP1R1P41586 468 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 PPP3CAQ08209 521 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 SLMAPQ14BN4 828 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 MIIPQ5JXC2 388 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 PRAMEF19Q5SWL8 479 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 MFSD14CQ5VZR4 134 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 WDR59Q6PJI9 974 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 CATSPERGQ6ZRH7 1159 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 TMEM139Q8IV31 216 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 EFCAB13Q8IY85 973 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 BBOF1Q8ND07 529 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 TPCN2Q8NHX9 752 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 OSMRQ99650 979 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 PARVAQ9NVD7 372 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 ZNF446Q9NWS9 450 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 SPDYE16A6NNV3 312 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-204ENST00000412568 CYP3A4P08684 503 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 CXCL8P10145 99 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 UBA1P22314 1058 aaKnown RBP11.85□□□□□ -0.51
PTPRF-204ENST00000412568 RRM1P23921 792 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 ADORA2AP29274 412 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 DGKDQ16760 1214 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 MMGT1Q8N4V1 131 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 RDM1Q8NG50 284 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 KLRG1Q96E93 195 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 PABPN1LA6NDY0 278 aaKnown RBP11.85□□□□□ -0.51
PTPRF-204ENST00000412568 RCCD1A6NED2 376 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 NFKBIEO00221 500 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 MAGEB2O15479 319 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 SLC26A4O43511 780 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 SASH3O75995 380 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 CYP11B1P15538 503 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 CDK17Q00537 523 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 GUCY1A3Q02108 690 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 FYB2Q5VWT5 728 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 SRRM1Q8IYB3 904 aaKnown RBP11.85□□□□□ -0.51
PTPRF-204ENST00000412568 PDIK1LQ8N165 341 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 CCDC33Q8N5R6 958 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 ATG4AQ8WYN0 398 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 FAF2Q96CS3 445 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 MED15Q96RN5 788 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 WNT8AQ9H1J5 351 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 OGTO15294 1046 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 TMEM253P0C7T8 217 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 KRT17Q04695 432 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 LAMTOR4Q0VGL1 99 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 KCNT1Q5JUK3 1230 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 FAM117BQ6P1L5 589 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 BTNL9Q6UXG8 535 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 USP38Q8NB14 1042 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 RNF139Q8WU17 664 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 HPDLQ96IR7 371 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 RBM41Q96IZ5 413 aaKnown RBP11.85□□□□□ -0.51
PTPRF-204ENST00000412568 C9orf72Q96LT7 481 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 SLITRK6Q9H5Y7 841 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 VIPAS39Q9H9C1 493 aa11.85□□□□□ -0.51
PTPRF-204ENST00000412568 DIS3Q9Y2L1 958 aaKnown RBP11.85□□□□□ -0.51
PTPRF-204ENST00000412568 H3BQF6 201 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 BNIP3LO60238 219 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 TOM1L1O75674 476 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 NAMPTP43490 491 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 GTF2A2P52657 109 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 EIF3BP55884 814 aaKnown RBP11.84□□□□□ -0.51
PTPRF-204ENST00000412568 RBP5P82980 135 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 KCNMA1Q12791 1236 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 CUL2Q13617 745 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 LRRC14Q15048 493 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 TRIM68Q6AZZ1 485 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 RAET1EQ8TD07 263 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms