RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 CASTOR2A6NHX0 329 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 SFI1A8K8P3 1242 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 BTBD18B2RXH4 712 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 KIAA0391O15091 583 aaKnown RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 CLIC2O15247 247 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 F13A1P00488 732 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 KRT8P05787 483 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 GUCY2CP25092 1073 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 STX2P32856 288 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 NOMO2Q5JPE7 1267 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 LGSNQ5TDP6 509 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 TBC1D19Q8N5T2 526 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 CALR3Q96L12 384 aaKnown RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 SLC4A9Q96Q91 983 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 CDK5RAP1Q96SZ6 601 aaKnown RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 KIFC3Q9BVG8 833 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 TUFT1Q9NNX1 390 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 NOP53Q9NZM5 478 aaKnown RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 ANGPTL2Q9UKU9 493 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 CNTNAP1P78357 1384 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 ABCC6O95255 1503 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 CHUKO15111 745 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 PCDH8O95206 1070 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 MAGEA9P43362 315 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 CNTN2Q02246 1040 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 YWHAHQ04917 246 aaPredicted RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 SUZ12Q15022 739 aaKnown RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 PDIA6Q15084 440 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 ACBD5Q5T8D3 534 aaPredicted RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 HEATR6Q6AI08 1181 aaKnown RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 PXYLP1Q8TE99 480 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 ZBTB9Q96C00 473 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 CARD6Q9BX69 1037 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 FOXP1Q9H334 677 aaPredicted RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 SLC39A2Q9NP94 309 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 KCNH7Q9NS40 1196 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 HOMER3Q9NSC5 361 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 SPATA6Q9NWH7 488 aaPredicted RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 BARHL2Q9NY43 387 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 RBAKQ9NYW8 714 aaPredicted RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 CLCA2Q9UQC9 943 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 ITM2BQ9Y287 266 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 SF3B1O75533 1304 aaKnown RBP eCLIP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 NEDD4P46934 1319 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 HNRNPCL2B2RXH8 293 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 HNRNPCL1O60812 293 aaKnown RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 LGALS2P05162 132 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 PFKPQ01813 784 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 NFE2Q16621 373 aaPredicted RBP7.73□□□□□ -1.17
SCN9A-202ENST00000409435 CNGA4Q8IV77 575 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 AOPEPQ8N6M6 819 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 REPS2Q8NFH8 660 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 GGT7Q9UJ14 662 aa7.73□□□□□ -1.17
SCN9A-202ENST00000409435 TTC4O95801 387 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 ITIH3Q06033 890 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 FNDC3BQ53EP0 1204 aaKnown RBP7.72□□□□□ -1.17
SCN9A-202ENST00000409435 CD302Q8IX05 232 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 SMC5Q8IY18 1101 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 DDI1Q8WTU0 396 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 RSAD2Q8WXG1 361 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 OLFM3Q96PB7 478 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 TRIM8Q9BZR9 551 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 SLC32A1Q9H598 525 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 PXDNLA1KZ92 1463 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 TRAV19A0A0A6YYK7 116 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 CCND3P30281 292 aaPredicted RBP7.72□□□□□ -1.17
SCN9A-202ENST00000409435 MXI1P50539 228 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 SUSD6Q92537 303 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 CHST12Q9NRB3 414 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 PCDHB5Q9Y5E4 795 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 PRPSAP2O60256 369 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 LZTS3O60299 673 aaPredicted RBP7.72□□□□□ -1.17
SCN9A-202ENST00000409435 EN2P19622 333 aaPredicted RBP7.72□□□□□ -1.17
SCN9A-202ENST00000409435 CENPCQ03188 943 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 GRSF1Q12849 480 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN9A-202ENST00000409435 PUS10Q3MIT2 529 aaKnown RBP7.72□□□□□ -1.17
SCN9A-202ENST00000409435 ZNF410Q86VK4 478 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 TRIML2Q8N7C3 387 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 ZNF653Q96CK0 615 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 MFSD14AQ96MC6 490 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 RIT2Q99578 217 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 ATG13O75143 517 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 CFIP05156 583 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 CCT5P48643 541 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 TRPC1P48995 793 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 CDR2Q01850 454 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 FMR1Q06787 632 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN9A-202ENST00000409435 KRT80Q6KB66 452 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 ABRAQ8N0Z2 381 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 ACRBPQ8NEB7 543 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 ATP8B4Q8TF62 1192 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 NELFBQ8WX92 580 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 BHMTQ93088 406 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 HLA-CQ95604 372 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 HHIPL1Q96JK4 782 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 COQ7Q99807 217 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 C1QTNF7Q9BXJ2 289 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 NAGPAQ9UK23 515 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 KANSL1LA0AUZ9 987 aa7.72□□□□□ -1.17
SCN9A-202ENST00000409435 ARHGAP10A1A4S6 786 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms