RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 HAUS2Q9NVX0 235 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 ZNF536O15090 1300 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 TJP1Q07157 1748 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 EIF4BP23588 611 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 PLTPP55058 493 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 SARNPP82979 210 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 LMNB2Q03252 620 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 CAPSQ13938 189 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 HYIQ5T013 277 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 RWDD4Q6NW29 188 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 DEFB128Q7Z7B8 93 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 PARD3BQ8TEW8 1205 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 L3MBTL3Q96JM7 780 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 GPR20Q99678 358 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 TMEM117Q9H0C3 514 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 MAGED2Q9UNF1 606 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 MYH13Q9UKX3 1938 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 ATMINO43313 823 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 TLR2O60603 784 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 MAFO75444 373 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 SMIM10L2AP0DMW4 78 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 SMIM10L2BP0DMW5 78 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 PCSK1P29120 753 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 SLC7A5Q01650 507 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 CRHR2Q13324 411 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 PTGISQ16647 500 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 DARS2Q6PI48 645 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 SPATA2LQ8IUW3 424 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 KIAA0319LQ8IZA0 1049 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 CD99L2Q8TCZ2 262 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 DHX38Q92620 1227 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 CCDC97Q96F63 343 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 GCNAQ96QF7 691 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 PARVAQ9NVD7 372 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 GRAP2O75791 330 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 LYPLA2O95372 231 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 RPLP2P05387 115 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 MAN1A1P33908 653 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 CTNNA1P35221 906 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 CACNB2Q08289 660 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 NME3Q13232 169 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 NAB2Q15742 525 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 SLC27A1Q6PCB7 646 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 CD302Q8IX05 232 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 PALM2Q8IXS6 379 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 UBA3Q8TBC4 463 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 LENG1Q96BZ8 264 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 RNF19AQ9NV58 838 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 CPSF3Q9UKF6 684 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 PCDHB7Q9Y5E2 793 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 MAD1L1Q9Y6D9 718 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 TAF1P21675 1872 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 CA12O43570 354 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 ZNF862O60290 1169 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 MSCO60682 206 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 TOMM70O94826 608 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 MOCS2O96007 188 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 ATP1A1P05023 1023 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 MYBL1P10243 752 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 MCF2P10911 925 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 KRT15P19012 456 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 GNL1P36915 607 aaPredicted RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 BASP1P80723 227 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 MTMR3Q13615 1198 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 STILQ15468 1287 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 FIGNQ5HY92 759 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 ZNF410Q86VK4 478 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 WDR49Q8IV35 697 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 FAM76AQ8TAV0 307 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 RBM41Q96IZ5 413 aaKnown RBP9.66□□□□□ -0.86
LIG4-202ENST00000405925 OSBPL9Q96SU4 736 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 IKZF4Q9H2S9 585 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 RNPEPQ9H4A4 650 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 IP6K2Q9UHH9 426 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 HEY1Q9Y5J3 304 aa9.66□□□□□ -0.86
LIG4-202ENST00000405925 ZBED1O96006 694 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 THP07101 528 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 SKIP12755 728 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 GRIK1P39086 918 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 PNPLA4P41247 253 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 C2CD6Q53TS8 623 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 RUFY4Q6ZNE9 571 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 BRSK2Q8IWQ3 736 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 SLC35G2Q8TBE7 412 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 HASPINQ8TF76 798 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 SEPT8Q92599 483 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 GOLPH3Q9H4A6 298 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 INTS13Q9NVM9 706 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 NKIRAS1Q9NYS0 192 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 MORC2Q9Y6X9 1032 aaPredicted RBP9.65□□□□□ -0.86
LIG4-202ENST00000405925 NDC80O14777 642 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 PDGFRAP16234 1089 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 GTF2BQ00403 316 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 LRRC55Q6ZSA7 311 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 RHOT1Q8IXI2 618 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 PPTC7Q8NI37 304 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 SREK1Q8WXA9 508 aaKnown RBP9.65□□□□□ -0.86
LIG4-202ENST00000405925 TATDN2Q93075 761 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 SHISA4Q96DD7 197 aa9.65□□□□□ -0.86
LIG4-202ENST00000405925 SIK2Q9H0K1 926 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms