RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ADAMTS1Q9UHI8 967 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 FBXL5Q9UKA1 691 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 OGDHLQ9ULD0 1010 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 TFR2Q9UP52 801 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 IPPQ9Y573 584 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 PCDHB2Q9Y5E7 798 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 ADGRG1Q9Y653 693 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 MEIS3P2A8K0S8 358 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 CYP26A1O43174 497 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 ZNF500O60304 480 aaPredicted RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 RPLP2P05387 115 aaKnown RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 CD58P19256 250 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 JAM2P57087 298 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 ENPEPQ07075 957 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 MGAT3Q09327 533 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 LPIN1Q14693 890 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 ZNF699Q32M78 642 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 UBXN11Q5T124 520 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 IRF2BP2Q7Z5L9 587 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 KIAA1328Q86T90 577 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 C1orf127Q8N9H9 656 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 HELQQ8TDG4 1101 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 DIS3LQ8TF46 1054 aaKnown RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 SYN2Q92777 582 aaPredicted RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 LPPQ93052 612 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 ZNF333Q96JL9 665 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 GPR88Q9GZN0 384 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 APOBEC3GQ9HC16 384 aaKnown RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 NUB1Q9Y5A7 615 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 UMODL1Q5DID0 1318 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 SIP14410 1827 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 SGPL1O95470 568 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 CALCAP01258 141 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 FERP16591 822 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 RFX1P22670 979 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 FECHP22830 423 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 POLR2BP30876 1174 aaKnown RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 CTCFP49711 727 aaPredicted RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 MCCD1P59942 119 aaPredicted RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 CDK17Q00537 523 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 PTPN14Q15678 1187 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 TRIM71Q2Q1W2 868 aaKnown RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 WDR72Q3MJ13 1102 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 ARHGAP29Q52LW3 1261 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 TAF3Q5VWG9 929 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 ZNF571Q7Z3V5 609 aaPredicted RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 RPAINQ86UA6 219 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 CCDC170Q8IYT3 715 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 SLC43A3Q8NBI5 491 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 SMG8Q8ND04 991 aaKnown RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 C18orf25Q96B23 403 aaPredicted RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 SNX27Q96L92 541 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 ZFP42Q96MM3 310 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 ZMAT2Q96NC0 199 aaKnown RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 ADAM2Q99965 735 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 IFIH1Q9BYX4 1025 aaKnown RBP3.99□□□□□ -1.77
RTN4-208ENST00000404909 FAM105AQ9NUU6 356 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 DPP3Q9NY33 737 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 AGAP1Q9UPQ3 857 aa3.99□□□□□ -1.77
RTN4-208ENST00000404909 TMCO5BA8MYB1 307 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 CCP110O43303 1012 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 MGEA5O60502 916 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 ZC3H11AO75152 810 aaKnown RBP eCLIP3.98□□□□□ -1.771e-32■■■■□ 22.5
RTN4-208ENST00000404909 WEE2P0C1S8 567 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 CCDC172P0C7W6 258 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 KCNJ6P48051 423 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 KRT83P78385 493 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 GCNT1Q02742 428 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 CUL2Q13617 745 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 SGSM1Q2NKQ1 1148 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 ZNF394Q53GI3 561 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TMEM270Q6UE05 265 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 SLC47A2Q86VL8 602 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 VPS36Q86VN1 386 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 DNAAF5Q86Y56 855 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 GLYCTKQ8IVS8 523 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 FAM126BQ8IXS8 530 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 MMS19Q96T76 1030 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 PPP1R12CQ9BZL4 782 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TUBGCP4Q9UGJ1 667 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 PUF60Q9UHX1 559 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 SIX4Q9UIU6 781 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 MYO6Q9UM54 1294 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 GUCA1BQ9UMX6 200 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 ATP11BQ9Y2G3 1177 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 PCDHB4Q9Y5E5 795 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 A0A087X0T9 212 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 SMIM28A0A1B0GU29 152 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 SSU72P8A0A1W2PR75 194 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 EIF3CLB5ME19 914 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 ZNF263O14978 683 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 ABL1P00519 1130 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 ASS1P00966 412 aaKnown RBP3.98□□□□□ -1.77
RTN4-208ENST00000404909 FAM228BP0C875 321 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 ITGA4P13612 1032 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 TNNT1P13805 278 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 MLH1P40692 756 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 CDK7P50613 346 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 CCL23P55773 120 aa3.98□□□□□ -1.77
RTN4-208ENST00000404909 BFSP2Q13515 415 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms