RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SOX4Q06945 474 aaPredicted RBP31.21■■■□□ 2.59
HMGB1-205ENST00000399494 NPAS3Q8IXF0 933 aa31.21■■■□□ 2.59
HMGB1-205ENST00000399494 KXD1Q9BQD3 176 aa31.21■■■□□ 2.59
HMGB1-205ENST00000399494 CLIC4Q9Y696 253 aa31.21■■■□□ 2.59
HMGB1-205ENST00000399494 TRIP11Q15643 1979 aa31.21■■■□□ 2.59
HMGB1-205ENST00000399494 CDC25AP30304 524 aa31.2■■■□□ 2.59
HMGB1-205ENST00000399494 NPTX2P47972 431 aa31.2■■■□□ 2.59
HMGB1-205ENST00000399494 CEBPZQ03701 1054 aaKnown RBP31.2■■■□□ 2.59
HMGB1-205ENST00000399494 PRKCQQ04759 706 aa31.2■■■□□ 2.59
HMGB1-205ENST00000399494 FOXD4L5Q5VV16 416 aaPredicted RBP31.2■■■□□ 2.59
HMGB1-205ENST00000399494 ERMP1Q7Z2K6 904 aa31.2■■■□□ 2.59
HMGB1-205ENST00000399494 MAML2Q8IZL2 1156 aaPredicted RBP31.2■■■□□ 2.59
HMGB1-205ENST00000399494 DAW1Q8N136 415 aa31.2■■■□□ 2.59
HMGB1-205ENST00000399494 FOXD4L4Q8WXT5 416 aaPredicted RBP31.2■■■□□ 2.59
HMGB1-205ENST00000399494 CDT1Q9H211 546 aa31.2■■■□□ 2.59
HMGB1-205ENST00000399494 TMEM134Q9H6X4 195 aa31.2■■■□□ 2.59
HMGB1-205ENST00000399494 DCHS1Q96JQ0 3298 aa31.2■■■□□ 2.58
HMGB1-205ENST00000399494 CCDC169A6NNP5 214 aa31.19■■■□□ 2.58
HMGB1-205ENST00000399494 YARSP54577 528 aaKnown RBP31.19■■■□□ 2.58
HMGB1-205ENST00000399494 PEX3P56589 373 aa31.19■■■□□ 2.58
HMGB1-205ENST00000399494 ZRSR1Q15695 479 aaKnown RBP31.19■■■□□ 2.58
HMGB1-205ENST00000399494 MLF2Q15773 248 aaPredicted RBP31.19■■■□□ 2.58
HMGB1-205ENST00000399494 POTEHQ6S545 545 aa31.19■■■□□ 2.58
HMGB1-205ENST00000399494 TAS1R3Q7RTX0 852 aa31.19■■■□□ 2.58
HMGB1-205ENST00000399494 ZNF461Q8TAF7 563 aa31.19■■■□□ 2.58
HMGB1-205ENST00000399494 CCDC94Q9BW85 323 aaPredicted RBP31.19■■■□□ 2.58
HMGB1-205ENST00000399494 MRPS23Q9Y3D9 190 aaKnown RBP31.19■■■□□ 2.58
HMGB1-205ENST00000399494 MTF2Q9Y483 593 aaPredicted RBP31.19■■■□□ 2.58
HMGB1-205ENST00000399494 E9PMD0 336 aa31.18■■■□□ 2.58
HMGB1-205ENST00000399494 ABLIM3O94929 683 aa31.18■■■□□ 2.58
HMGB1-205ENST00000399494 OSTNP61366 133 aa31.18■■■□□ 2.58
HMGB1-205ENST00000399494 SLC8B1Q6J4K2 584 aa31.18■■■□□ 2.58
HMGB1-205ENST00000399494 ING5Q8WYH8 240 aa31.18■■■□□ 2.58
HMGB1-205ENST00000399494 ZMAT2Q96NC0 199 aaKnown RBP31.18■■■□□ 2.58
HMGB1-205ENST00000399494 AVENQ9NQS1 362 aaPredicted RBP31.18■■■□□ 2.58
HMGB1-205ENST00000399494 TOPORSQ9NS56 1045 aaPredicted RBP31.18■■■□□ 2.58
HMGB1-205ENST00000399494 COL4A3Q01955 1670 aa31.18■■■□□ 2.58
HMGB1-205ENST00000399494 RHOP08100 348 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 ZSCAN22P10073 491 aaPredicted RBP31.17■■■□□ 2.58
HMGB1-205ENST00000399494 PFKPQ01813 784 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 ZC3H14Q6PJT7 736 aaKnown RBP31.17■■■□□ 2.58
HMGB1-205ENST00000399494 MCRS1Q96EZ8 462 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 CDK5RAP3Q96JB5 506 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 AK8Q96MA6 479 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 TARS2Q9BW92 718 aaKnown RBP31.17■■■□□ 2.58
HMGB1-205ENST00000399494 OSBPL6Q9BZF3 934 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 SLC38A7Q9NVC3 462 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 ARHGAP28Q9P2N2 729 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 DNM3Q9UQ16 869 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 EP300Q09472 2414 aaPredicted RBP31.17■■■□□ 2.58
HMGB1-205ENST00000399494 PHLPP2Q6ZVD8 1323 aa31.17■■■□□ 2.58
HMGB1-205ENST00000399494 CACNA1IQ9P0X4 2223 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 ARHGEF37A1IGU5 675 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 TBC1D4O60343 1298 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 HIP1RO75146 1068 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 PTPN2P17706 415 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 ROR1Q01973 937 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 SLC5A9Q2M3M2 681 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 ZNF568Q3ZCX4 644 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 MRPL4Q9BYD3 311 aaKnown RBP31.16■■■□□ 2.58
HMGB1-205ENST00000399494 PLA2G2FQ9BZM2 168 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 GDE1Q9NZC3 331 aa31.16■■■□□ 2.58
HMGB1-205ENST00000399494 FAM170BA6NMN3 283 aa31.15■■■□□ 2.58
HMGB1-205ENST00000399494 PODXLO00592 558 aa31.15■■■□□ 2.58
HMGB1-205ENST00000399494 ABLIM1O14639 778 aa31.15■■■□□ 2.58
HMGB1-205ENST00000399494 ECI2O75521 394 aa31.15■■■□□ 2.58
HMGB1-205ENST00000399494 KCNE1P15382 129 aa31.15■■■□□ 2.58
HMGB1-205ENST00000399494 PROZP22891 400 aa31.15■■■□□ 2.58
HMGB1-205ENST00000399494 MAPK7Q13164 816 aa31.15■■■□□ 2.58
HMGB1-205ENST00000399494 VARS2Q5ST30 1063 aaKnown RBP31.15■■■□□ 2.58
HMGB1-205ENST00000399494 ZNF396Q96N95 335 aaPredicted RBP31.15■■■□□ 2.58
HMGB1-205ENST00000399494 ACAP3Q96P50 834 aa31.15■■■□□ 2.58
HMGB1-205ENST00000399494 MMTAG2Q9BU76 263 aaKnown RBP31.15■■■□□ 2.58
HMGB1-205ENST00000399494 BCO2Q9BYV7 579 aa31.15■■■□□ 2.58
HMGB1-205ENST00000399494 RBM19Q9Y4C8 960 aaKnown RBP31.15■■■□□ 2.58
HMGB1-205ENST00000399494 WDR27A2RRH5 827 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 F13A1P00488 732 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 CD72P21854 359 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 LONP1P36776 959 aaKnown RBP31.14■■■□□ 2.58
HMGB1-205ENST00000399494 MRPL58Q14197 206 aaKnown RBP31.14■■■□□ 2.58
HMGB1-205ENST00000399494 UBXN2BQ14CS0 331 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 PTPAQ15257 358 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 RINT1Q6NUQ1 792 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 C1orf186Q6ZWK4 172 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 USP28Q96RU2 1077 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 RUSC1Q9BVN2 902 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 KMT5AQ9NQR1 393 aa31.14■■■□□ 2.58
HMGB1-205ENST00000399494 FRYLO94915 3013 aa31.14■■■□□ 2.57
HMGB1-205ENST00000399494 FANCMQ8IYD8 2048 aa31.14■■■□□ 2.57
HMGB1-205ENST00000399494 MEFVO15553 781 aaPredicted RBP31.13■■■□□ 2.57
HMGB1-205ENST00000399494 MCF2P10911 925 aa31.13■■■□□ 2.57
HMGB1-205ENST00000399494 ATF2P15336 505 aa31.13■■■□□ 2.57
HMGB1-205ENST00000399494 MARCKSP29966 332 aaPredicted RBP31.13■■■□□ 2.57
HMGB1-205ENST00000399494 ELF1P32519 619 aa31.13■■■□□ 2.57
HMGB1-205ENST00000399494 UBA7P41226 1012 aa31.13■■■□□ 2.57
HMGB1-205ENST00000399494 DMP1Q13316 513 aaPredicted RBP31.13■■■□□ 2.57
HMGB1-205ENST00000399494 TCEAL8Q8IYN2 117 aa31.13■■■□□ 2.57
HMGB1-205ENST00000399494 NTPCRQ9BSD7 190 aaKnown RBP31.13■■■□□ 2.57
HMGB1-205ENST00000399494 TCHPQ9BT92 498 aa31.13■■■□□ 2.57
HMGB1-205ENST00000399494 LTB4R2Q9NPC1 389 aa31.13■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms