RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SYAP1Q96A49 352 aaPredicted RBP11.33□□□□□ -0.6
NEDD8-202ENST00000396828 AK8Q96MA6 479 aa11.33□□□□□ -0.6
NEDD8-202ENST00000396828 ZMAT2Q96NC0 199 aaKnown RBP11.33□□□□□ -0.6
NEDD8-202ENST00000396828 CLIC6Q96NY7 704 aa11.33□□□□□ -0.6
NEDD8-202ENST00000396828 RTP3Q9BQQ7 232 aa11.33□□□□□ -0.6
NEDD8-202ENST00000396828 FOXQ1Q9C009 403 aa11.33□□□□□ -0.6
NEDD8-202ENST00000396828 TBC1D17Q9HA65 648 aa11.33□□□□□ -0.6
NEDD8-202ENST00000396828 DDX19AQ9NUU7 478 aaKnown RBP11.33□□□□□ -0.6
NEDD8-202ENST00000396828 DLGAP2Q9P1A6 1054 aa11.33□□□□□ -0.6
NEDD8-202ENST00000396828 KIAA1024Q9UPX6 916 aa11.33□□□□□ -0.6
NEDD8-202ENST00000396828 FGFR3P22607 806 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 TKTP29401 623 aaKnown RBP11.32□□□□□ -0.6
NEDD8-202ENST00000396828 BRCC3P46736 316 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 FXR2P51116 673 aaKnown RBP eCLIP11.32□□□□□ -0.6
NEDD8-202ENST00000396828 OSTNP61366 133 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 GPC5P78333 572 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 UPP1Q16831 310 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 ATF7IP2Q5U623 682 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 RESP18Q5W5W9 173 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 ELMSAN1Q6PJG2 1045 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 KCNK18Q7Z418 384 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 ERMNQ8TAM6 284 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 SLC7A14Q8TBB6 771 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 GPT2Q8TD30 523 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 FGF13Q92913 245 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 NKD2Q969F2 451 aaPredicted RBP11.32□□□□□ -0.6
NEDD8-202ENST00000396828 ANP32EQ9BTT0 268 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 ARHGEF3Q9NR81 526 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.32□□□□□ -0.6
NEDD8-202ENST00000396828 DNMT3BQ9UBC3 853 aaKnown RBP11.32□□□□□ -0.6
NEDD8-202ENST00000396828 LRWD1Q9UFC0 647 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 POLIQ9UNA4 740 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 CDY1Q9Y6F8 540 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 CACNA1IQ9P0X4 2223 aa11.32□□□□□ -0.6
NEDD8-202ENST00000396828 SMIM28A0A1B0GU29 152 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 SFI1A8K8P3 1242 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 NRG2O14511 850 aaPredicted RBP11.31□□□□□ -0.6
NEDD8-202ENST00000396828 B3GAT3O94766 335 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 NPTX2P47972 431 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 PEX3P56589 373 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 CREMQ03060 361 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 FAM160A1Q05DH4 1040 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 MAPK7Q13164 816 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 RAB33AQ14088 237 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 PDIA5Q14554 519 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 PPM1LQ5SGD2 360 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 DCLRE1AQ6PJP8 1040 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 SHC4Q6S5L8 630 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 ALKAL1Q6UXT8 129 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.31□□□□□ -0.6
NEDD8-202ENST00000396828 ADSSL1Q8N142 457 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 IGSF22Q8N9C0 903 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 ING5Q8WYH8 240 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 NXPE3Q969Y0 559 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 DDX27Q96GQ7 796 aaKnown RBP11.31□□□□□ -0.6
NEDD8-202ENST00000396828 ZBTB45Q96K62 511 aaPredicted RBP11.31□□□□□ -0.6
NEDD8-202ENST00000396828 SNX27Q96L92 541 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 ACO2Q99798 780 aaKnown RBP11.31□□□□□ -0.6
NEDD8-202ENST00000396828 PYM1Q9BRP8 204 aaKnown RBP11.31□□□□□ -0.6
NEDD8-202ENST00000396828 ADPGKQ9BRR6 497 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 MMTAG2Q9BU76 263 aaKnown RBP11.31□□□□□ -0.6
NEDD8-202ENST00000396828 RUSC1Q9BVN2 902 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 CDT1Q9H211 546 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 PTPRHQ9HD43 1115 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 MTRRQ9UBK8 725 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 CDH7Q9ULB5 785 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 MTF2Q9Y483 593 aaPredicted RBP11.31□□□□□ -0.6
NEDD8-202ENST00000396828 R4GN57 208 aa11.31□□□□□ -0.6
NEDD8-202ENST00000396828 A0A1B0GVL5 298 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 CCDC169A6NNP5 214 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 TMEM189-UBE2V1I3L0A0 370 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 K7ERI5 159 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 ABLIM1O14639 778 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 KINO60870 393 aaKnown RBP11.3□□□□□ -0.6
NEDD8-202ENST00000396828 HIP1RO75146 1068 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 PFKFB1P16118 471 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 UBA7P41226 1012 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 SYKP43405 635 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 GRIN1Q05586 938 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 SNW1Q13573 536 aaKnown RBP11.3□□□□□ -0.6
NEDD8-202ENST00000396828 PPP2R5AQ15172 486 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 SLC5A9Q2M3M2 681 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 DCAF4L1Q3SXM0 396 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 SEZ6Q53EL9 994 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 XKR4Q5GH76 650 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 LIN9Q5TKA1 542 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 PHLDB3Q6NSJ2 640 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 MAML2Q8IZL2 1156 aaPredicted RBP11.3□□□□□ -0.6
NEDD8-202ENST00000396828 RASSF8Q8NHQ8 419 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 SNX29Q8TEQ0 813 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 KIFAP3Q92845 792 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 C18orf25Q96B23 403 aaPredicted RBP11.3□□□□□ -0.6
NEDD8-202ENST00000396828 CCDC34Q96HJ3 373 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 IFT74Q96LB3 600 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 KXD1Q9BQD3 176 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 TARS2Q9BW92 718 aaKnown RBP11.3□□□□□ -0.6
NEDD8-202ENST00000396828 PLA2G2FQ9BZM2 168 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 SLC2A4RGQ9NR83 387 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 CCDC39Q9UFE4 941 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 KCNH3Q9ULD8 1083 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms