RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 LRRIQ3A6PVS8 624 aaPredicted RBP16.29■□□□□ 0.2
SCAF11-204ENST00000395454 EXTL3O43909 919 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 TACC1O75410 805 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 TIMP1P01033 207 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 PRLRP16471 622 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 ITGB8P26012 769 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 GCLMP48507 274 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 MBTPS1Q14703 1052 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 TMEM132AQ24JP5 1023 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 C15orf39Q6ZRI6 1047 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 SAAL1Q96ER3 474 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 BICD1Q96G01 975 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 FZD8Q9H461 694 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 AGO3Q9H9G7 860 aaKnown RBP16.29■□□□□ 0.2
SCAF11-204ENST00000395454 PRMT7Q9NVM4 692 aaPredicted RBP16.29■□□□□ 0.2
SCAF11-204ENST00000395454 SALL4Q9UJQ4 1053 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 INTUQ9ULD6 942 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 TANC1Q9C0D5 1861 aa16.29■□□□□ 0.2
SCAF11-204ENST00000395454 SCN5AQ14524 2016 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 MACROD2A1Z1Q3 448 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 KIAA0355O15063 1070 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 ATP1A1P05023 1023 aaKnown RBP16.28■□□□□ 0.2
SCAF11-204ENST00000395454 CCDC172P0C7W6 258 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 H2AFXP16104 143 aaPredicted RBP16.28■□□□□ 0.2
SCAF11-204ENST00000395454 ARID5AQ03989 594 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 PAK2Q13177 524 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 PRPF4BQ13523 1007 aaKnown RBP16.28■□□□□ 0.2
SCAF11-204ENST00000395454 LPIN1Q14693 890 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 KRT39Q6A163 491 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 SLFN12LQ6IEE8 588 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 ZPBP2Q6X784 338 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 TSHZ1Q6ZSZ6 1077 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 FAM228AQ86W67 206 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 UBXN4Q92575 508 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 RABGGTAQ92696 567 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 PCDHGC5Q9Y5F6 944 aa16.28■□□□□ 0.2
SCAF11-204ENST00000395454 TNRC18O15417 2968 aaPredicted RBP16.28■□□□□ 0.2
SCAF11-204ENST00000395454 GOLGA8IPA6NC78 632 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 GOLGA8JA6NMD2 632 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 B4GALT5O43286 388 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 NBNO60934 754 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 EDN1P05305 212 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 CD52P31358 61 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 LIG4P49917 911 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 VPS36Q86VN1 386 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 USP38Q8NB14 1042 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 ALS2CR12Q96Q35 445 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.27■□□□□ 0.2
SCAF11-204ENST00000395454 ST3GAL5Q9UNP4 418 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 SAR1BQ9Y6B6 198 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 V9GYY5 206 aaPredicted RBP16.27■□□□□ 0.2
SCAF11-204ENST00000395454 TET1Q8NFU7 2136 aa16.27■□□□□ 0.2
SCAF11-204ENST00000395454 A0A0B4J269 797 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 TTLL13PA6NNM8 815 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 DDX3XO00571 662 aaKnown RBP eCLIP16.27■□□□□ 0.192e-14■■■□□ 17.3
SCAF11-204ENST00000395454 ACKR2O00590 384 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 GPR182O15218 404 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 SYN1P17600 705 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 RBM10P98175 930 aaKnown RBP16.27■□□□□ 0.19
SCAF11-204ENST00000395454 PSMD6Q15008 389 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 PCBP1Q15365 356 aaKnown RBP eCLIP16.27■□□□□ 0.19
SCAF11-204ENST00000395454 DEFB128Q7Z7B8 93 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 GPIHBP1Q8IV16 184 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 CPB2Q96IY4 423 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 NOX5Q96PH1 765 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 MRPL4Q9BYD3 311 aaKnown RBP16.27■□□□□ 0.19
SCAF11-204ENST00000395454 PADI3Q9ULW8 664 aa16.27■□□□□ 0.19
SCAF11-204ENST00000395454 PIN4Q9Y237 131 aaKnown RBP16.27■□□□□ 0.19
SCAF11-204ENST00000395454 ZNF233A6NK53 670 aa16.26■□□□□ 0.19
SCAF11-204ENST00000395454 TSPAN1O60635 241 aa16.26■□□□□ 0.19
SCAF11-204ENST00000395454 ZC3H11AO75152 810 aaKnown RBP eCLIP16.26■□□□□ 0.19
SCAF11-204ENST00000395454 PARNO95453 639 aaKnown RBP16.26■□□□□ 0.19
SCAF11-204ENST00000395454 ARF4P18085 180 aaPredicted RBP16.26■□□□□ 0.19
SCAF11-204ENST00000395454 AMHR2Q16671 573 aa16.26■□□□□ 0.19
SCAF11-204ENST00000395454 FAM187BQ17R55 369 aa16.26■□□□□ 0.19
SCAF11-204ENST00000395454 GOLGA1Q92805 767 aa16.26■□□□□ 0.19
SCAF11-204ENST00000395454 TARS2Q9BW92 718 aaKnown RBP16.26■□□□□ 0.19
SCAF11-204ENST00000395454 HAPLN2Q9GZV7 340 aa16.26■□□□□ 0.19
SCAF11-204ENST00000395454 SQORQ9Y6N5 450 aa16.26■□□□□ 0.19
SCAF11-204ENST00000395454 LAMA3Q16787 3333 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 A0A0A6YYK5 440 aaPredicted RBP16.25■□□□□ 0.19
SCAF11-204ENST00000395454 MOCS3O95396 460 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 GPNMBQ14956 572 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 ALKBH5Q6P6C2 394 aaKnown RBP16.25■□□□□ 0.19
SCAF11-204ENST00000395454 CRELD2Q6UXH1 353 aaPredicted RBP16.25■□□□□ 0.19
SCAF11-204ENST00000395454 ZNF572Q7Z3I7 529 aaPredicted RBP16.25■□□□□ 0.19
SCAF11-204ENST00000395454 CDR2LQ86X02 465 aaPredicted RBP16.25■□□□□ 0.19
SCAF11-204ENST00000395454 ARHGEF19Q8IW93 802 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 TMEM199Q8N511 208 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 GPR161Q8N6U8 529 aaKnown RBP16.25■□□□□ 0.19
SCAF11-204ENST00000395454 FBXL13Q8NEE6 735 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.25■□□□□ 0.19
SCAF11-204ENST00000395454 ANKFY1Q9P2R3 1169 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 ZMYND8Q9ULU4 1186 aaPredicted RBP16.25■□□□□ 0.19
SCAF11-204ENST00000395454 SNX12Q9UMY4 172 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 CNTNAP2Q9UHC6 1331 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 CEP290O15078 2479 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 ENC1O14682 589 aa16.25■□□□□ 0.19
SCAF11-204ENST00000395454 LDHAP00338 332 aaKnown RBP16.25■□□□□ 0.19
SCAF11-204ENST00000395454 PNMA6AP0CW24 399 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms