RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PCDHB8Q9UN66 801 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 COLQQ9Y215 455 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 HELZP42694 1942 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CETN3O15182 167 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CSDE1O75534 798 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CXCL8P10145 99 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 RFX1P22670 979 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 WARSP23381 471 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 NR2F2P24468 414 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 RPL34P49207 117 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CASP4P49662 377 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 VAMP7P51809 220 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 MYL5Q02045 173 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CREMQ03060 361 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 ADAM9Q13443 819 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 DHX8Q14562 1220 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 FAM114A1Q8IWE2 563 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CACTINQ8WUQ7 758 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 IGSF21Q96ID5 467 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 FAM81BQ96LP2 452 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 ERGIC2Q96RQ1 377 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 TGS1Q96RS0 853 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 ASS1P00966 412 aaKnown RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 MYCNP04198 464 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 ZNF132P52740 706 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 YARSP54577 528 aaKnown RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 TCP11X2Q5H9J9 407 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 SMYD4Q8IYR2 804 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 HELQQ8TDG4 1101 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 SIX2Q9NPC8 291 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 ITIH6Q6UXX5 1313 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 A0A1B0GTH6 734 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 A0A1W2PQC6 194 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 FGFR1P11362 822 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 MLH1P40692 756 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 SLC11A1P49279 550 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 AFF1P51825 1210 aaKnown RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 BCAR1P56945 870 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 SPAG1Q07617 926 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 TMEM132DQ14C87 1099 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 TDRD10Q5VZ19 366 aaKnown RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 USP37Q86T82 979 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 FAM186BQ8IYM0 893 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 PIK3R5Q8WYR1 880 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 CDCA3Q99618 268 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 AVENQ9NQS1 362 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 AAASQ9NRG9 546 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 CTNND2Q9UQB3 1225 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 TRIM49BA6NDI0 452 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 SMTNL1A8MU46 457 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 SOD2P04179 222 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 NFICP08651 508 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 ELAVL2Q12926 359 aaKnown RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 CAMK4Q16566 473 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 CYP26C1Q6V0L0 522 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 ZNF280BQ86YH2 543 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 FAM200AQ8TCP9 573 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 SPPL3Q8TCT6 385 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 SLC22A17Q8WUG5 538 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 IQCDQ96DY2 449 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 TTYH3Q9C0H2 523 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 MYO6Q9UM54 1294 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 SSX2IPQ9Y2D8 614 aa7.59□□□□□ -1.19
LIMA1-202ENST00000394943 KIAA0100Q14667 2235 aaKnown RBP7.59□□□□□ -1.19
LIMA1-202ENST00000394943 ATP8B3O60423 1300 aa7.59□□□□□ -1.2
LIMA1-202ENST00000394943 LCHNA4D1U4 455 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 PPP3CAQ08209 521 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 SMARCB1Q12824 385 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 MAN2A1Q16706 1144 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 DUOXA2Q1HG44 320 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 UVSSAQ2YD98 709 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 CAVIN1Q6NZI2 390 aaKnown RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 OTOP2Q7RTS6 562 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 TMEM86AQ8N2M4 240 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 FIBCD1Q8N539 461 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 TTC39CQ8N584 583 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 GAD1Q99259 594 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 FAM213AQ9BRX8 229 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 EDEM3Q9BZQ6 932 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 NAT10Q9H0A0 1025 aaKnown RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 TTYH1Q9H313 450 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 CYP3A43Q9HB55 503 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 DSEQ9UL01 958 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 SIK3Q9Y2K2 1263 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 FRMD4BQ9Y2L6 1034 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 NRP1O14786 923 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 CTSAP10619 480 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 EPB41P11171 864 aaKnown RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 NFX1Q12986 1120 aaKnown RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 SLC8B1Q6J4K2 584 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 SASS6Q6UVJ0 657 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 KCNT2Q6UVM3 1135 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 MICALL1Q8N3F8 863 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 C3orf58Q8NDZ4 430 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 LPPQ93052 612 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 RTP3Q9BQQ7 232 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 MTRRQ9UBK8 725 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 SOX1O00570 391 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 FECHP22830 423 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms