RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CDO1Q16878 200 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 SLFN11Q7Z7L1 901 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 PDIK1LQ8N165 341 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 PDCD7Q8N8D1 485 aaKnown RBP17.11■□□□□ 0.33
PCDH1-203ENST00000394536 MKL1Q969V6 931 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 POLR3FQ9H1D9 316 aaPredicted RBP17.11■□□□□ 0.33
PCDH1-203ENST00000394536 PCDHA3Q9Y5H8 950 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 LRP6O75581 1613 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 CICQ96RK0 1608 aaPredicted RBP17.11■□□□□ 0.33
PCDH1-203ENST00000394536 SNX3O60493 162 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 PSMA2P25787 234 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 SPIRE1Q08AE8 756 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 NIM1KQ8IY84 436 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 CCHCR1Q8TD31 782 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 MAML1Q92585 1016 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 ZFP69BQ9UJL9 534 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 ALS2Q96Q42 1657 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 FRMPD4Q14CM0 1322 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 ZNF142P52746 1687 aaPredicted RBP17.1■□□□□ 0.33
PCDH1-203ENST00000394536 IGKV6D-41A0A0C4DH26 115 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 ASAP2O43150 1006 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 ALDH5A1P51649 535 aaPredicted RBP17.1■□□□□ 0.33
PCDH1-203ENST00000394536 ITIH4Q14624 930 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 BMT2Q1RMZ1 405 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 TKFCQ3LXA3 575 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 RHPN2Q8IUC4 686 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.1■□□□□ 0.33
PCDH1-203ENST00000394536 CNOT7Q9UIV1 285 aaKnown RBP17.1■□□□□ 0.33
PCDH1-203ENST00000394536 H0YGN5 161 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 ZSCAN5DPP0CG00 497 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 KIF22Q14807 665 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 BTNL9Q6UXG8 535 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 KCTD6Q8NC69 237 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 LENG9Q96B70 501 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 GLIS2Q9BZE0 524 aaPredicted RBP17.1■□□□□ 0.33
PCDH1-203ENST00000394536 UBN1Q9NPG3 1134 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 RNF146Q9NTX7 359 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 NFS1Q9Y697 457 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 SCINQ9Y6U3 715 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 INO80B-WBP1J3KQ70 363 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 ADRB2P07550 413 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 KRT76Q01546 638 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 PPP2R5DQ14738 602 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 KRT27Q7Z3Y8 459 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 MCEEQ96PE7 176 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 INO80BQ9C086 356 aaPredicted RBP17.1■□□□□ 0.33
PCDH1-203ENST00000394536 LRRC4CQ9HCJ2 640 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 TAF1P21675 1872 aa17.1■□□□□ 0.33
PCDH1-203ENST00000394536 ARHGAP42A6NI28 874 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 POLRMTO00411 1230 aaKnown RBP17.09■□□□□ 0.33
PCDH1-203ENST00000394536 NOP56O00567 594 aaKnown RBP17.09■□□□□ 0.33
PCDH1-203ENST00000394536 P4HA2O15460 535 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 NUDT17P0C025 328 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 MMP13P45452 471 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 JAK3P52333 1124 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 PPP2R5CQ13362 524 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 ATP13A4Q4VNC1 1196 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 GMCL1P1Q8NEA9 526 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 CCDC110Q8TBZ0 833 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 DTX3LQ8TDB6 740 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 TMEM237Q96Q45 408 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 YY1AP1Q9H869 796 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 PIK3R2O00459 728 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 HSPA1LP34931 641 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 DARS2Q6PI48 645 aaKnown RBP17.09■□□□□ 0.33
PCDH1-203ENST00000394536 ZC3H18Q86VM9 953 aaKnown RBP17.09■□□□□ 0.33
PCDH1-203ENST00000394536 PARD3BQ8TEW8 1205 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 CCT6BQ92526 530 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 CFAP36Q96G28 342 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 TXNDC16Q9P2K2 825 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 ENTPD3O75355 529 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 PSAPP07602 524 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 KITP10721 976 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 ITGB5P18084 799 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 RRP1BQ14684 758 aaKnown RBP17.09■□□□□ 0.33
PCDH1-203ENST00000394536 IL31RAQ8NI17 732 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 RBM41Q96IZ5 413 aaKnown RBP17.09■□□□□ 0.33
PCDH1-203ENST00000394536 WRAP73Q9P2S5 460 aaPredicted RBP17.09■□□□□ 0.33
PCDH1-203ENST00000394536 STXBP5LQ9Y2K9 1186 aa17.09■□□□□ 0.33
PCDH1-203ENST00000394536 NCANO14594 1321 aa17.08■□□□□ 0.33
PCDH1-203ENST00000394536 GYG2O15488 501 aa17.08■□□□□ 0.33
PCDH1-203ENST00000394536 DCTN3O75935 186 aa17.08■□□□□ 0.33
PCDH1-203ENST00000394536 ESRRAP11474 423 aaPredicted RBP17.08■□□□□ 0.33
PCDH1-203ENST00000394536 ECHS1P30084 290 aa17.08■□□□□ 0.33
PCDH1-203ENST00000394536 POLR2BP30876 1174 aaKnown RBP17.08■□□□□ 0.33
PCDH1-203ENST00000394536 SPRED3Q2MJR0 410 aa17.08■□□□□ 0.33
PCDH1-203ENST00000394536 ACCSLQ4AC99 568 aa17.08■□□□□ 0.33
PCDH1-203ENST00000394536 RBBP8NLQ8NC74 664 aaPredicted RBP17.08■□□□□ 0.33
PCDH1-203ENST00000394536 MCPH1Q8NEM0 835 aa17.08■□□□□ 0.33
PCDH1-203ENST00000394536 AGAP11Q8TF27 550 aa17.08■□□□□ 0.33
PCDH1-203ENST00000394536 TARS2Q9BW92 718 aaKnown RBP17.08■□□□□ 0.33
PCDH1-203ENST00000394536 C10orf88Q9H8K7 445 aa17.08■□□□□ 0.33
PCDH1-203ENST00000394536 TRPC5Q9UL62 973 aaPredicted RBP17.08■□□□□ 0.33
PCDH1-203ENST00000394536 UBE4BO95155 1302 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 HOXA10P31260 410 aaPredicted RBP17.08■□□□□ 0.32
PCDH1-203ENST00000394536 FMO1Q01740 532 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 KCNT1Q5JUK3 1230 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 TMEM35BQ8NCS4 154 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 SEMA4DQ92854 862 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 KREMEN1Q96MU8 473 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms