RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 PCDHAC2Q9Y5I4 1007 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 ZNFX1Q9P2E3 1918 aaKnown RBP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 SMCHD1A6NHR9 2005 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 COL11A2P13942 1736 aaPredicted RBP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 FAM47DPA6NHR8 397 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 SLC16A4O15374 487 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 PRPF4O43172 522 aaKnown RBP eCLIP10.63□□□□□ -0.71
COL17A1-203ENST00000393211 TBC1D12O60347 775 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 ANP32DO95626 131 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 GARTP22102 1010 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 CNGA1P29973 690 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 ADSSP30520 456 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 ECE1P42892 770 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 MSH2P43246 934 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 PEX3P56589 373 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 KCNJ2P63252 427 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 ATP11AP98196 1134 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 CYP24A1Q07973 514 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 SNX1Q13596 522 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 LRRC14Q15048 493 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 TKFCQ3LXA3 575 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 CHADLQ6NUI6 762 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 ANKS1BQ7Z6G8 1248 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 CBWD2Q8IUF1 395 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 OGFOD1Q8N543 542 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 ZCCHC9Q8N567 271 aaKnown RBP10.63□□□□□ -0.71
COL17A1-203ENST00000393211 TMEM161BQ8NDZ6 487 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 EXD1Q8NHP7 514 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 CFAP61Q8NHU2 1237 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.63□□□□□ -0.71
COL17A1-203ENST00000393211 AGAP11Q8TF27 550 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 TBC1D31Q96DN5 1066 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 GJD4Q96KN9 370 aaPredicted RBP10.63□□□□□ -0.71
COL17A1-203ENST00000393211 TMEM237Q96Q45 408 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 POP1Q99575 1024 aaKnown RBP10.63□□□□□ -0.71
COL17A1-203ENST00000393211 KIAA1586Q9HCI6 787 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 MRPL47Q9HD33 250 aaKnown RBP10.63□□□□□ -0.71
COL17A1-203ENST00000393211 KCNG1Q9UIX4 513 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 ZBTB21Q9ULJ3 1066 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 RPL26L1Q9UNX3 145 aaKnown RBP10.63□□□□□ -0.71
COL17A1-203ENST00000393211 SMG5Q9UPR3 1016 aaKnown RBP10.63□□□□□ -0.71
COL17A1-203ENST00000393211 NFASCO94856 1347 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 MROH7Q68CQ1 1323 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 SCN9AQ15858 1988 aa10.63□□□□□ -0.71
COL17A1-203ENST00000393211 E7ENQ6 273 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 H0YCG3 227 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 LIN7AO14910 233 aaPredicted RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 UNC5CO95185 931 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 CYP1A1P04798 512 aaPredicted RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 TAC1P20366 129 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 PTGER2P43116 358 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 YARSP54577 528 aaKnown RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 RTP1P59025 263 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 KRT76Q01546 638 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 DMP1Q13316 513 aaPredicted RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 MPP2Q14168 576 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 SETDB1Q15047 1291 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 NSMFQ6X4W1 530 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 SV2AQ7L0J3 742 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 MAEAQ7L5Y9 396 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 OTUD6AQ7L8S5 288 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 CPNE8Q86YQ8 564 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 AGGF1Q8N302 714 aaeCLIP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 FITM2Q8N6M3 262 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 ANKRD42Q8N9B4 389 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 MGARPQ8TDB4 240 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 ACER1Q8TDN7 264 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 TAS1R2Q8TE23 839 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 SH3TC2Q8TF17 1288 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 NSMCE1Q8WV22 266 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 FAM151AQ8WW52 585 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 MAML1Q92585 1016 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 INPP5DQ92835 1189 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 CNKSR1Q969H4 720 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 STAMBPL1Q96FJ0 436 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 PITPNM3Q9BZ71 974 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 SSU72Q9NP77 194 aaKnown RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 C1orf112Q9NSG2 853 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 CHORDC1Q9UHD1 332 aaPredicted RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 SCINQ9Y6U3 715 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 ASTN2O75129 1339 aaPredicted RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 MYPNQ86TC9 1320 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 GOLGA8IPA6NC78 632 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 GOLGA8JA6NMD2 632 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 DDX39AO00148 427 aaKnown RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 HNRNPCL1O60812 293 aaKnown RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 DKC1O60832 514 aaKnown RBP eCLIP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 DCTN3O75935 186 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 KRT16P08779 473 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 KRT5P13647 590 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 CREB1P16220 341 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 KLRC2P26717 231 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 ALDH3A1P30838 453 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 MAGEA4P43358 317 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 NSFP46459 744 aaKnown RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 CLDN10P78369 228 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 MYO1EQ12965 1108 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 GRIPAP1Q4V328 841 aa10.62□□□□□ -0.71
COL17A1-203ENST00000393211 BRDTQ58F21 947 aaPredicted RBP10.62□□□□□ -0.71
COL17A1-203ENST00000393211 ZC3H12AQ5D1E8 599 aaKnown RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms