RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SLC35F6Q8N357 371 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 APPL2Q8NEU8 664 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ERLEC1Q96DZ1 483 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 SIK2Q9H0K1 926 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 DPP3Q9NY33 737 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 L1RE1Q9UN81 338 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 PCDHB2Q9Y5E7 798 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 TTC26A0AVF1 554 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ALDH2P05091 517 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 FGFR1P11362 822 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 RDXP35241 583 aaKnown RBP11□□□□□ -0.65
COL6A3-205ENST00000392004 ZNF618Q5T7W0 954 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ZNF697Q5TEC3 545 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 TMEM199Q8N511 208 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ANKZF1Q9H8Y5 726 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 AGPAT5Q9NUQ2 364 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 FNDC3AQ9Y2H6 1198 aaKnown RBP11□□□□□ -0.65
COL6A3-205ENST00000392004 SYNGAP1Q96PV0 1343 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 ACKR2O00590 384 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 TLL1O43897 1013 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 CABYRO75952 493 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 H2AFZP0C0S5 128 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 FMO5P49326 533 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 CDC42EP1Q00587 391 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 ZBTB41Q5SVQ8 909 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 H2AFVQ71UI9 128 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.99□□□□□ -0.65
COL6A3-205ENST00000392004 RNF139Q8WU17 664 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 PNKPQ96T60 521 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 RSAD1Q9HA92 442 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 INTS13Q9NVM9 706 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 RAB20Q9NX57 234 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 PCSK1NQ9UHG2 260 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 CEP104O60308 925 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 GUCY2CP25092 1073 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 RTP1P59025 263 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 KRT17Q04695 432 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 PPP6R3Q5H9R7 873 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-205ENST00000392004 PLPPR4Q7Z2D5 763 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 ACP6Q9NPH0 428 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 RAB21Q9UL25 225 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 LACTBL1A8MY62 500 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 TRAPPC3O43617 180 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 MAFO75444 373 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-205ENST00000392004 GNA15P30679 374 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 SNX17Q15036 470 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 TMEM119Q4V9L6 283 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 TAPT1Q6NXT6 567 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 SLC27A1Q6PCB7 646 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 FBXO46Q6PJ61 603 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-205ENST00000392004 ZNF512Q96ME7 567 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-205ENST00000392004 CDHR5Q9HBB8 845 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 KCND2Q9NZV8 630 aa10.99□□□□□ -0.65
COL6A3-205ENST00000392004 EXTL3O43909 919 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 CXCR5P32302 372 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 VSNL1P62760 191 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 NME3Q13232 169 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 SV2AQ7L0J3 742 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 TMTC1Q8IUR5 882 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 EFCAB13Q8IY85 973 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 CPA5Q8WXQ8 436 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 YY1AP1Q9H869 796 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 DBR1Q9UK59 544 aaKnown RBP10.98□□□□□ -0.65
COL6A3-205ENST00000392004 EPN1Q9Y6I3 576 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-205ENST00000392004 A0A1W2PQ45 241 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-205ENST00000392004 A0A1W2PQY0 241 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 DHX15O43143 795 aaKnown RBP10.98□□□□□ -0.65
COL6A3-205ENST00000392004 DLG4P78352 724 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 LRRC8DQ7L1W4 858 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 PEX26Q7Z412 305 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 ERICH1Q86X53 443 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 NME8Q8N427 588 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 GPATCH11Q8N954 259 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 SECISBP2LQ93073 1101 aaKnown RBP10.98□□□□□ -0.65
COL6A3-205ENST00000392004 CCDC51Q96ER9 411 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 SELENOOQ9BVL4 669 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 EIF2AQ9BY44 585 aaKnown RBP10.98□□□□□ -0.65
COL6A3-205ENST00000392004 MCOLN1Q9GZU1 580 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 SLC45A1Q9Y2W3 748 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 UNCXA6NJT0 531 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 GOLGA8CPA6NN73 597 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 LGALS16A8MUM7 142 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 ANKRD65E5RJM6 399 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 MYO1FO00160 1098 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 GAS2O43903 313 aaKnown RBP10.98□□□□□ -0.65
COL6A3-205ENST00000392004 RNF40O75150 1001 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 CSF2RAP15509 400 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 TRAPPC11Q7Z392 1133 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 MRRFQ96E11 262 aaKnown RBP10.98□□□□□ -0.65
COL6A3-205ENST00000392004 CEP63Q96MT8 703 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 RUFY1Q96T51 708 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 CALN1Q9BXU9 219 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 UBE2OQ9C0C9 1292 aaKnown RBP10.98□□□□□ -0.65
COL6A3-205ENST00000392004 C11orf49Q9H6J7 331 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 XPNPEP1Q9NQW7 623 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 NUDT5Q9UKK9 219 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 MYO6Q9UM54 1294 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 SLC4A7Q9Y6M7 1214 aa10.98□□□□□ -0.65
COL6A3-205ENST00000392004 NFASCO94856 1347 aa10.97□□□□□ -0.65
COL6A3-205ENST00000392004 CYB561D2O14569 222 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms